Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g1089 ATGGCCCAACAGTCATCCAGGCTTCAGCGCTTGCTTACTCTCTTGGACACTGGCTCAAGCCAAGCAACAAGGTTAACTGCAGCTCGGCAGATAGGGGAGATTGCAAAATCACACCCTCAAGATTTGACCAGTCTTCTTAAGAAGGTTTCTCAATATCTGCGAAGTAAAAAATGGGATACAAGAGTTGCAGCTGCCCATGCAATTGGGTCTATTGCCGAGAATGTTAAGCACATAAGCTTGAATGAACTTATTGCTTCTGTTGTAACAAAAATGTCTGAGAGTGGGATATCTTGTAGTGTTGATGATCTGTGTGCATGGCCTTATTTACAAGCAAAAATTACAGGAAGCTCATTTAGAAGCTTTGATATGAATAAGGTGCTTGAATTTGGAGCTTTATTAGCATCAGGAGGACAGGAATATGATATTGCAAGTGATAATATAAAGAACCCGAAAGAGCGATTGGTTCGCCAGAAGCAAAATCTCCGACGTCGTTTAGGTTTGGATGTGTGCGAACAATTTATGGATATCAATGATGTAATAAGAGATGAAGATCTTATGGCACACAAATCAGACTCATATCTCAATGGCGTAGATCATAAAGTTTTTACATCTTGTTCTGTACATAACATCCAGAAAATGGTTGCAAATATGGTTCCTAGTGTCAAATCAAAGTGGCCGAGTGCTAGAGAACGGAATCTTTTAAAACGCAAAGCAAAAATTAACTCAAAAGACCAAACAAAGAGCTGGTGCGAGGATGGAACAGAGCCTTCAGGTACTCAAAATTTGACTTCAAAAGGCACATGTCCTGATCCAGGAAATTATAGTAAGTCATTCGAACAAGTTAATCACGAGGAAGATGGATTTGAGCATGATGGAGATGGACAATGGCCTTTCGGTACTTTTGTTGAGCAACTTATTATTGATATGTTTGATCCTGTTTGGGAGATACGGCATGGTAGTGTGATGGCATTGAGGGAGATTTTAACACATCAAGGTGCTTCGGCTGGAGTGTTTAAACACGACACACGCTTGGGTGGGACATCGTTTGTGGAATTAGAAGACAGAAATATATCAAATATGTTGAAGAGAGAGAGGGACATTGATTTAAATATGCAAGTTTCAGCAGATGAGAGTGTCTTGAACTTGAAGAGGCCAAAACTTGAAGATGTATCATTGTCAACTTCTATGGATAGCGTGATGACTTGCAGCAATGATGGTGATATTGAAAACAGCATTAGTTCTGAAACCCTGGGATGCAATTTACCTCTGGATTATGGGAATGGGAAATTTGATGGTAGTTCTGTTGATATGAATCTTGAAACTCACTCTGACGGTTTACATGATGCATGCAAGGACTCTGCTAATATTGCAGAGCAGAAGGGTTATTCTGTTGACAAAATGATTCCTTCTGGAAGCCCTAATGTGCTGAGAAATCTTCCTCAGAATTGTGAGCTGATGAATTTGGTTAAAGTGGCTAGAGGTTCCTGGCTTCGAAACTGTGAATTTCTTCATGACTGTGTCATTCGCTTTTTGTGTGTATTGTCACTTGACCGCTTTGGAGATTATGTATCTGATCAGGTTGTTGCTCCAGTGCGTGAAACCTGTGCACAGGCATTAGGGGCTGCATTTAAGTATATGCATGCTGCACTAGTAAATGAAACATTGAACATATTGTTGAAAATGCAGTGTAGTCCAGAATGGGAGATTCGTCATGGCAGTCTTCTGGGTATCAAATATTTGGTTGCTGTGCGGCAGGAGATGCTTTCCGATTTGCTTGGACGTGTTCTTCCTGCATGTAAATCTGGGTTGGAGGACCCAGATGATGATGTCCGAGCTGTTGCTGCTGATGCTTTAATACCAGCTGCAGCTGCAATTGTTGCTTTGCAGGGTCAAACACTGCATTCAATTGTGATGCTGTTGTGGGATATATTGCTTGATTTGGATGATTTAAGTCCATCCACTAGCAGTGTAATGAATCTGCTTGCAGAAATCTATTCTCATCAAGAGATGGTCCCGAAGATGTACAAAGTTTTTAAATTGGGCGACAAGGAAATGGAAAATGGTGCTGGTGGTTGTGGTGATGCTGGAGAAGAAAATCCTTTTGTACTTTCAACTTTGGCACCACGTTTGTGGCCCTTTATGAGGCACAGCATCACATCTGTCCGTTATTCAGCAATAAGAACTCTGGAGAGGCTACTTGAAGCTGGATATAAGAGAAGCATGTCTGAGCTCTCCCCTGCTTCTTATTGGCCCTCTTCTATATTTGGAGATACCCTTAGAATTGTCTTTCAGAATTTACTATTGGAAACGAATGAGGATATTTTGCAATGTTCCGAGAGAGTTTGGAGTCTCCTTGTTCAGTGTTCTGTCGAGGACCTGGAGAATGCTGCAAGCTCTTACATGACTTCCTGGATAGAACTAGCATCTACACCTTTTGGTTCTGCATTAGATGCCTCAAAGATGTTTTGGCCTGTTGCCTTTCCACGAAAAAGTCAATTTAGAGCAGCAGCTAAAATGAGGGCTGTGAAGATTGAAAATGAATATGGCGGAGATTTTGGCCTTGAATCTACGAAATCAACTATTCCACAGGATAGAAATGGAGATTTTCCTTTGAATTCCATTAAGATAATTGTTGGTGCTGAGGTCGACATATCAGTAACTCGTACCCGGGTAGTTACAGCAACTGCTTTGGGAACTTTCGCCTCTAAGCTTCCAGAGGGTTCTTCAAAGTATATAACTGATCCACTATGGAGTTCATTAACCTCTCTGTCTGGTGTCCAACGCCAGGTTGCATCTTTGGTACTTATTTCTTGGTTCAAGGAGAATAGGACCAGGAGTTTGTCTGAAAGCCTCAGTGTTATTCCTGCTTGCTTCAAAGATTGGTTGCTGGACTTATTAGCATGTTCTGACCCTGCTTTTCCAACAAAAGGTTCACTTCTTCCTTATGCTGAGCTTTCAAGAACTTATTCAAAGATGCGAAGTGAGGCTGTTCAATTGATAAATGTAGTCAAGTCTTCTGGTATGTTTAGCGAGTTATTGACAACAACCAATATTGAGTTGGATAACGTGAGTGTAGATGATGCCATTGGTTTTGCATCAAAAATTCCAGCGGTGTGTAATGATGGTTCTGCAAATGAATCTAGAAAGAACACTATGGATGATATTGAATCGTCAAAACAGAGGCTCTTGACAACTTCCGGTTATTTGAAATGTGTTCAGAGTAATTTGCATGTTACGGTTACATCTGCAGTTGCAGCTGCAGTTGTGTGGATGTCTGAGTTTCCTACACGGCTCACCCCCATCATTTTGCCTTTGATGGCTTCAATCAGACGAGAGCAGGAGGAAATACTGCAAATTAAGTCAGCTGAGGCTCTGGCTGAGCTTATATATCACTGTGTTTCACGTAGACCTTGCCCCAATGATAAATTAATTAAGAACATATGTAGTTTGACTTGCATGGATCCCTCTGAGACTCCTCAAGCTAAATCCATTTGTTCCATCGAGAGTATTGATGACCAAGGTCTTCTGTCTTTCAGAACTCCTGTGAATAAACAAAAGTCAAAGGTGCATGTGCTGACTGGTGAGGATCGATCAAAGGTAGAGGGATTTATAAGTAGACGTGGATCTGAGCAATCATTAAGGCTTCTGTGTGAGAAGTTCGGTGTTTTGCTATTTGATAAGGTTCCTAAGCTGTGGGATTGTCTTACTGAGGTTCTTAAGCCAAGTTCCTCTGAATCTCTACTTGCCGCTAATGAAAAGCAAGATACTGTAGCATTTGAGTCTGTTAGTGATCCTCAGACCTTGATCAACAATATCCAGGTTGTGCGGTCTGTTGCCCCCTTGTTAAATGAAGAGTTGAGGCCAAAACTTTTGACACTTCTCCCATCTGTTTTTAAATGTGTTAAGCATTCTCATGTCGCTGTTAGACTAGCTGCTTCGCGCTGCATCACCTCCATGGCCCAGTCAATGCTTGTGAAAGTCATGGGAGCTGTGGTTGAAAATGCTATCCCTATGTTGGAAGATGCATCGTCAGTTCATGCTCGGCAAGGAGCAGGCATGTTGATTAGCTTTCTTGTTCAGGGGCTTGGTGTGGAGTTGGTCCCATATGCTCCTCTGCTGGTGGTACCCCTTCTACGATGCATGAGTGATTGTGATCAGTCTGTTAGACAGAGTGTGACCCATAGCTTTGCTGCTCTTGTACCTTTACTTCCTTTAGCACGTGGTGTTCCTCAACCAATTGGATTAGGGGAAGGTATATCTAGAAATGCAGAAGATTTACATTTTCTGGAGCAACTACTTGACAACTCTCATATTGAAGATTACAAGTTGTGCACTGAATTGAAAGTAACATTGAGAAGGTATCAACAGGAAGGCATTAATTGGTTAGCTTTTCTGAAACGTTTCAAACTTCATGGAATTTTATGTGATGACATGGGGCTTGGTAAGACACTTCAAGCATCAGCAATTGTGGCCTCTGATATAGTTGAGCGTCGAACTCAAATTGGCAATGAGGATCTTCTGCCATCTTTAATTATTTGTCCGTCAACACTAGTTGGACACTGGGCCTTTGAGATAGAAAAGTTTATTGATGTTTCAGTCATATCTAGTCTTCAGTATGTTGGTTCTGCTCAGGATCGAATGCTTCTTCGAGATAGTTTTTGCAAGCATAATGTTATTATAACATCATATGATGTTATCCGTAAAGATATTGAATATTTGGGACAGCTGCCGTGGAATTACTGCATTTTAGATGAAGGACATATAATAAAAAATGCCAAGTCTAAAGTTACTCTTGCTGTAAAGCAGTTGAAAGCCCAACACCGCTTGATATTGAGTGGGACACCGATACAGAATAACATAATGGATTTATGGTCCCTTTTTGATTTTTTGATGCCTGGATTTCTCGGAACAGATAGACAGTTCCAAGGCACATACGGAAAACCACTTTTAGCTTCAAGAGATCCAAAGTGCTCTGCTAAGGATGCCGAAGCTGGAGCACTTGCTATGGAAGCATTGCATAAGCAGGTCATGCCTTTCCTCCTTCGGAGGACAAAGGATGAAGTCTTGTCCGATTTGCCAGAGAAAATAATTCAAGACAGATACTGTGATTTGAGCACTGTCCAACTTAAACTTTACGAACAGTTTTCTGGTTCTCGTGCAAAACAAGAGGTGTCATCTATTGTAACAATGAATGAGTCAGCTGCAGCGGAAGGAAGTAGCAGTTCTACTAAAGCGTCTTCACATGTTTTCCAGGCGCTCCAATACTTGCTAAAACTCTGTAGTCATCCATTGCTTGTACTTGGTGGGAAGATTCCAGATTCACTCTCTACCATCCTTTTGGAAGTGTTTCCTGCTGGTTCTGATGTCATTTCAGAACTTCACAAACTCCATCACTCTCCAAAACTAGTTGCTCTTCATGAGATTCTCGAAGAGTGTGGAATTGGAGTTGATGTTTCAGGTACTGACGCTGCTGTTGGCATTGGGCAGCATAGGGTCTTGATATTTGCTCAACATAAGGCGTTCTTGGATATAATTGAAAAAGATTTGTTTCAGACACACATGAAAAGTGTCACATATTTGCGGTTGGATGGATCAGTTGAGACCGAGAAGCGATTTGAAATTGTAAAAGCTTTCAATTCAGATCCTACCATTGATGTCTTATTGCTTACGACTCATGTGGGCGGGCTTGGTTTGAACCTGACATCTGCAGATACCCTTGTTTTTGTGGAGCATGACTGGAATCCTATGCGTGATCTTCAGGCTATGGATAGAGCGCACAGGTTAGGTCAGAAAAAAGTTGTTAATGTTCACCGTCTGATAATGCGTGGTACTCTGGAAGAGAAAGTTATGAGTCTACAACGGTTTAAAGTGTCAGTCGCTAACGCTGTCATTAACGCGGAAAATGCTAGTTTAAAAACAATGAATACAGATCAGTTGCTTGATTTATTTGCATCAGCAGATATCCCCAAGAAGGGGTCTTCTGCTGCGAAGAATTCAGAGGACAACACTGATGGAGACCCTAAATTATTAGGCAGCGGAAAGGGAATGAAAGCAATACTTGGGGGATTGGAGGATCTATGGGACCAATCACAATATACAGAGGAGTACAATTTGAGTCAATTTTTGGCGAAGCTTAATGGTTAA 6144 0.4144 MAQQSSRLQRLLTLLDTGSSQATRLTAARQIGEIAKSHPQDLTSLLKKVSQYLRSKKWDTRVAAAHAIGSIAENVKHISLNELIASVVTKMSESGISCSVDDLCAWPYLQAKITGSSFRSFDMNKVLEFGALLASGGQEYDIASDNIKNPKERLVRQKQNLRRRLGLDVCEQFMDINDVIRDEDLMAHKSDSYLNGVDHKVFTSCSVHNIQKMVANMVPSVKSKWPSARERNLLKRKAKINSKDQTKSWCEDGTEPSGTQNLTSKGTCPDPGNYSKSFEQVNHEEDGFEHDGDGQWPFGTFVEQLIIDMFDPVWEIRHGSVMALREILTHQGASAGVFKHDTRLGGTSFVELEDRNISNMLKRERDIDLNMQVSADESVLNLKRPKLEDVSLSTSMDSVMTCSNDGDIENSISSETLGCNLPLDYGNGKFDGSSVDMNLETHSDGLHDACKDSANIAEQKGYSVDKMIPSGSPNVLRNLPQNCELMNLVKVARGSWLRNCEFLHDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHAALVNETLNILLKMQCSPEWEIRHGSLLGIKYLVAVRQEMLSDLLGRVLPACKSGLEDPDDDVRAVAADALIPAAAAIVALQGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSHQEMVPKMYKVFKLGDKEMENGAGGCGDAGEENPFVLSTLAPRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSMSELSPASYWPSSIFGDTLRIVFQNLLLETNEDILQCSERVWSLLVQCSVEDLENAASSYMTSWIELASTPFGSALDASKMFWPVAFPRKSQFRAAAKMRAVKIENEYGGDFGLESTKSTIPQDRNGDFPLNSIKIIVGAEVDISVTRTRVVTATALGTFASKLPEGSSKYITDPLWSSLTSLSGVQRQVASLVLISWFKENRTRSLSESLSVIPACFKDWLLDLLACSDPAFPTKGSLLPYAELSRTYSKMRSEAVQLINVVKSSGMFSELLTTTNIELDNVSVDDAIGFASKIPAVCNDGSANESRKNTMDDIESSKQRLLTTSGYLKCVQSNLHVTVTSAVAAAVVWMSEFPTRLTPIILPLMASIRREQEEILQIKSAEALAELIYHCVSRRPCPNDKLIKNICSLTCMDPSETPQAKSICSIESIDDQGLLSFRTPVNKQKSKVHVLTGEDRSKVEGFISRRGSEQSLRLLCEKFGVLLFDKVPKLWDCLTEVLKPSSSESLLAANEKQDTVAFESVSDPQTLINNIQVVRSVAPLLNEELRPKLLTLLPSVFKCVKHSHVAVRLAASRCITSMAQSMLVKVMGAVVENAIPMLEDASSVHARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGVPQPIGLGEGISRNAEDLHFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIVERRTQIGNEDLLPSLIICPSTLVGHWAFEIEKFIDVSVISSLQYVGSAQDRMLLRDSFCKHNVIITSYDVIRKDIEYLGQLPWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTDRQFQGTYGKPLLASRDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSTVQLKLYEQFSGSRAKQEVSSIVTMNESAAAEGSSSSTKASSHVFQALQYLLKLCSHPLLVLGGKIPDSLSTILLEVFPAGSDVISELHKLHHSPKLVALHEILEECGIGVDVSGTDAAVGIGQHRVLIFAQHKAFLDIIEKDLFQTHMKSVTYLRLDGSVETEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDLQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASLKTMNTDQLLDLFASADIPKKGSSAAKNSEDNTDGDPKLLGSGKGMKAILGGLEDLWDQSQYTEEYNLSQFLAKLNG* 2048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g1089 2047 SUPERFAMILY ARM repeat 6 1490 IPR016024 -
Mal7g1089 2047 Gene3D - 1264 1407 IPR011989 -
Mal7g1089 2047 Gene3D - 506 686 IPR011989 -
Mal7g1089 2047 Pfam Helicase conserved C-terminal domain 1829 1929 IPR001650 -
Mal7g1089 2047 SMART ultradead3 1447 1641 IPR014001 -
Mal7g1089 2047 MobiDBLite consensus disorder prediction 251 278 - -
Mal7g1089 2047 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 1 1979 IPR044972 GO:0003677|GO:0016887|GO:0017025
Mal7g1089 2047 Gene3D - 4 95 IPR011989 -
Mal7g1089 2047 CDD SF2_C_SNF 1798 1940 - -
Mal7g1089 2047 SMART helicmild6 1843 1929 IPR001650 -
Mal7g1089 2047 CDD DEXHc_Mot1 1451 1683 IPR044078 GO:0005524
Mal7g1089 2047 MobiDBLite consensus disorder prediction 1991 2011 - -
Mal7g1089 2047 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1819 1979 IPR001650 -
Mal7g1089 2047 MobiDBLite consensus disorder prediction 244 278 - -
Mal7g1089 2047 Pfam Domain of unknown function (DUF3535) 781 1234 IPR022707 -
Mal7g1089 2047 Pfam SNF2-related domain 1469 1765 IPR000330 GO:0005524|GO:0140658
Mal7g1089 2047 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1463 1633 IPR014001 -
Mal7g1089 2047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1430 1683 IPR027417 -
Mal7g1089 2047 Gene3D - 1693 2008 IPR027417 -
Mal7g1089 2047 Gene3D - 1424 1682 IPR038718 -
Mal7g1089 2047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1684 1985 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g1089 Mal-Chr7 31934576 31966636 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g1089 1446 1984 RAD5 or RAD16-like Gene Family AT1G02670 25.743 1.66e-42 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal7g1089 DUF3535 1.8e-103 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g1089 K15192 - gmx:100777977 3481.42