Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g1017 ATGACTAGAAGAAAGCTTAAACTTGCTTTCATTGTCAACGACTCTGCTAGAAAAACGTCTTATAAGAAAAGAACGAAGGGTCTATTGAAGAAGGTATATGAACTAAGCACCCTTTGTGGAATAGAAGCGTGTGCTATAGTTTATGGTCCTTATGAACCTCAACCTGAGATGTGGCCATCACCTGAGGGAGTCCAAACCGTGCTCTCAAAATTTAGAGAAATGCATGAGTTTGAGAAGAGCAATAAAATGGTAAACCAAGAAACCTTCATGAAACAAATGGTTCTGAAGGCCAAAGAGAAACTAAAGAAACAAAGGCAAGACAATTGGAAAAATGAGATGACGATACTCGTGTCTCAATGTCTTGGTGCAGGTAAAATTGTGCATAATAATATGTCAATGGTTGATTTGAAACATCTTGGTTGGTTAATTGACCACAATTTGAAGGAAGTTGGTAGAAGGTTGGAAGCTCCGGATAGTAATGATTATAGTCAAAGTCAAATTATGACTACTCAAAGCCAAATCCCACTCCAATTGGCGCCACCACCGGCACCCATGGATGATGAAATAGTAATGATGGGACATAACCATGTTGGGATGACTATGAACAATAATGGAATCATGCAAAGTCCATTTTCTGTGGATTTTATGATAAATGGTAACGGAGATGAGGCAATTCCAATTGGTGAGGTCGATCCTCAATTTTTGCCCAATCTTATACCTTGA 723 0.3873 MTRRKLKLAFIVNDSARKTSYKKRTKGLLKKVYELSTLCGIEACAIVYGPYEPQPEMWPSPEGVQTVLSKFREMHEFEKSNKMVNQETFMKQMVLKAKEKLKKQRQDNWKNEMTILVSQCLGAGKIVHNNMSMVDLKHLGWLIDHNLKEVGRRLEAPDSNDYSQSQIMTTQSQIPLQLAPPPAPMDDEIVMMGHNHVGMTMNNNGIMQSPFSVDFMINGNGDEAIPIGEVDPQFLPNLIP* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g1017 240 PANTHER MADS BOX PROTEIN 2 178 - -
Mal7g1017 240 Gene3D - 13 113 IPR036879 GO:0003677|GO:0046983
Mal7g1017 240 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Mal7g1017 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal7g1017 240 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Mal7g1017 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Mal7g1017 240 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal7g1017 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal7g1017 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal7g1017 240 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g1017 Mal-Chr7 29613080 29613802 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g1017 1 184 Type I MADS-box Gene Family AT5G48670 47.644 1.14e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal7g1017 SRF-TF 1.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g1017 - - mtr:MTR_4g032620 294.278