Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g1016 ATGACTAGAAGAAAGCTTAAACTTGCTTTCATTGTCAACGATTCTGCTAGAAAAGCGTCTTATAAGAAGAGAATGAAGGGTCTATTGAAGAAGGTATATGAACTAAGCACCCTTTGTGGAATAGAAGCGTGTGCTATAGTTTATGGTCCTTATGAACCTCAACCTGAGATGTGGCCATCACCTGAGGGAGTCCAAACCGTGCTCTCAAAATTTAGAGAAATGCATGAGTTTGAGAAGAGCAATAAAATGGTAAACCAAGAAACCTTCATGAAACAAATGGTTCTGAAGGCCAAAGAGAAACTAAAGAAACAAAGGCAAGACAATTGGAAAAATGAGATGACGATACTCATGTCTCAATGTCTTGGTGCAGGTAAAATTGTGCATAATAATATGTCAATGGTTGATTTGAAACATCTTGGTTGGTTAATTGACCACAATTTGAAGGAAGTTGGTAGAAGGTTGGAAGCCCCGGATAGTAATGATCATAGTCAAAGTCAAATTATGACGACTCAAAGCCAAATCCCACTCCAATTGGCGCCACCACCGGCACCCATGGATGATGAAATGGTAATTATGGGACATAACCATGTTGGGATGACTATGAACAGTAATGGAATCATCCAAAGTCCATTTTCTGTGGATTTTATGATAAATGGTAACGGAGATGAGGCAATTCCATTTGGTGAGGTCGATCCTCAATTTTTGCCCAATCTTCTACCTTGA 723 0.3928 MTRRKLKLAFIVNDSARKASYKKRMKGLLKKVYELSTLCGIEACAIVYGPYEPQPEMWPSPEGVQTVLSKFREMHEFEKSNKMVNQETFMKQMVLKAKEKLKKQRQDNWKNEMTILMSQCLGAGKIVHNNMSMVDLKHLGWLIDHNLKEVGRRLEAPDSNDHSQSQIMTTQSQIPLQLAPPPAPMDDEMVIMGHNHVGMTMNSNGIIQSPFSVDFMINGNGDEAIPFGEVDPQFLPNLLP* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g1016 240 Gene3D - 13 114 IPR036879 GO:0003677|GO:0046983
Mal7g1016 240 PANTHER MADS BOX PROTEIN 2 178 - -
Mal7g1016 240 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 178 - -
Mal7g1016 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal7g1016 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal7g1016 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal7g1016 240 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Mal7g1016 240 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal7g1016 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Mal7g1016 240 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g1016 Mal-Chr7 29601132 29601854 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g1016 1 184 Type I MADS-box Gene Family AT5G48670 48.691 2.91e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal7g1016 SRF-TF 1.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g1016 - - mtr:MTR_4g032620 300.441