LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal7g1014	ATGACTAGAAGAAAGGTTAAACTTGCTTTCATTGTCAACGATTATGCTAGAAAAACAACTTATAAGAAAAGGACGAAGGGTCTGTTGAAGAAGGTATATGAACTAAGCACCCTTTGTGGAATAGAAGCGTGTGCTATAGTTTATGGCCCTTATGAGCTTCAACCTAAGATGTGGCCATCACCTGAGGGAGTCCAAACCGTGCTCTCAAAATTTAGAGAATTGCATGAGTTTGAGAAGAGCAGTAAAATGGTAAACCAAGAGTCCTTCATGAAACAAAGGGTTCTGAAGGCTAAAGAGAAACTAAAGAATCAAAGGCGAGACAATTGGGAAAAAAAGATGACGATACTCATGTCTCAATGTCTTGCTGCAGGTAAAATTGTGCATAATAATATGTCCATGGTTGATTTGAAACATCTTGGTTGGTTAATTAACCAGAATTTGAAGGAGGTTGGTAGAAGGTTGGAAGAACCGGATAATAAAGATCATAATCAAATTCAAATTATGACTACTGAAAGCCAAATCTCACTCCAAATGGTACCACCACCGGCATTTATGGATGATGAAATGGCAATGATGGGACATGGCCATGATAGGATGAGTATGAACAATAATGCCATCATGCAAAGTCAATTTTCTATGGACTTCATGACAGGTTGGTTAATTGACAAGAATTTGAAGGACGTTTGTAGAAGGTTGGAAGCACCGAATAATAAAGATCGTAGTCAAAGTCAAATTATGACTACTCAAAGCCAAATCCCACTCCAAATGGCACCACCACCGGCATTCATGGATGATGAAATGGCAATGATGGGACATGGCCATGCTGGAATGAGTATGAACAATAATGGCATCATGCAAAGTCAATTTTCTATGGACTTCATGATAAATGGTAATGGAGATGAGGCAATTCCTTTTGGTGAGGTCGATCCTCAATTTTTGCCCAATCTGCTACCTTGA	957	0.3898	MTRRKVKLAFIVNDYARKTTYKKRTKGLLKKVYELSTLCGIEACAIVYGPYELQPKMWPSPEGVQTVLSKFRELHEFEKSSKMVNQESFMKQRVLKAKEKLKNQRRDNWEKKMTILMSQCLAAGKIVHNNMSMVDLKHLGWLINQNLKEVGRRLEEPDNKDHNQIQIMTTESQISLQMVPPPAFMDDEMAMMGHGHDRMSMNNNAIMQSQFSMDFMTGWLIDKNLKDVCRRLEAPNNKDRSQSQIMTTQSQIPLQMAPPPAFMDDEMAMMGHGHAGMSMNNNGIMQSQFSMDFMINGNGDEAIPFGEVDPQFLPNLLP*	319

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal7g1014	318	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	11	50	IPR002100	GO:0003677\|GO:0046983
	Mal7g1014	318	Gene3D	-	14	113	IPR036879	GO:0003677\|GO:0046983
	Mal7g1014	318	PANTHER	MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN	2	164	-	-
	Mal7g1014	318	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Mal7g1014	318	CDD	MADS_SRF_like	2	85	IPR033897	GO:0000981\|GO:0000987\|GO:0045944
	Mal7g1014	318	PANTHER	MADS BOX PROTEIN	2	164	-	-
	Mal7g1014	318	SUPERFAMILY	SRF-like	2	94	IPR036879	GO:0003677\|GO:0046983
	Mal7g1014	318	ProSiteProfiles	MADS-box domain profile.	1	49	IPR002100	GO:0003677\|GO:0046983
	Mal7g1014	318	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Mal7g1014	318	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal7g1014	Mal-Chr7	29424609	29425565	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal7g1014	1	155	Type I MADS-box Gene Family	AT5G48670	56.774	1.25e-49	166

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Mal7g1014		SRF-TF	2.6e-15	No_clan