Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g1012 ATGACTAGAAGAAAGGTTAAACTTGCTTTCATTGTCAACGATTATGCTAGAAAATCAACTTATAAGAAAAGGACGAAGGGTCTATTGAAGAAGGCATATGAACTAAGCACGCTTTGTGGAATAGAAGCGTGTGCTATAGTTTATGGCCCTTATGAGCCTGAACCTGAGATTTGGCCATCATCTGAGGGTGTCCAAACTGTGCTCTCAAAATTTAGGGAAACACATGAGTTTGTGAAGAGCAAGAAAATGGTAAACCAAGAAACCTTCATGAAACAAAGGGTTCTGAAGGCTAAAGAGAAACTAAAGAAACACAGACAAGATAATTGGGAAATTGAGATGACGATACTTTTGTCTCAATGTCTTGCTGCTAGTAAAATTGTGCATAATAATATGTCAATGGTTGATTCGAAACATCTTGGTTGGTTAATTGACCAGAATTTGAAGGAAGTTGATAGAAGGTTGGAAGAAATGGGTAGTAATGATCATAATCAAAGTGAAATGATGACTACTCAAAGCCAAATCCCACTCCAATTGGCACCACCACCGACACCCATGGATGATGAAATGGTAATGATGGGACATGGCCATGCTGGGATGACTATGAACAATAGTGACATCATGCAAAGTCCATTTTTTATGGACTTCAAGATAAATGGTAATGGAGATGAGGCAATTCCATTTGGTGAGGTCAATCCTGAATTTTTGCCCAATCTACTACCTTGA 723 0.3845 MTRRKVKLAFIVNDYARKSTYKKRTKGLLKKAYELSTLCGIEACAIVYGPYEPEPEIWPSSEGVQTVLSKFRETHEFVKSKKMVNQETFMKQRVLKAKEKLKKHRQDNWEIEMTILLSQCLAASKIVHNNMSMVDSKHLGWLIDQNLKEVDRRLEEMGSNDHNQSEMMTTQSQIPLQLAPPPTPMDDEMVMMGHGHAGMTMNNSDIMQSPFFMDFKINGNGDEAIPFGEVNPEFLPNLLP* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g1012 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Mal7g1012 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal7g1012 240 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Mal7g1012 240 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Mal7g1012 240 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 179 - -
Mal7g1012 240 PANTHER MADS BOX PROTEIN 2 179 - -
Mal7g1012 240 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal7g1012 240 Gene3D - 14 107 IPR036879 GO:0003677|GO:0046983
Mal7g1012 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal7g1012 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g1012 Mal-Chr7 29389417 29390139 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g1012 1 155 Type I MADS-box Gene Family AT5G48670 55.128 7.32e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal7g1012 SRF-TF 1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g1012 - - mtr:MTR_4g032620 305.449