Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g0880 ATGATGGAGAAACACAAGTGCAAACTTTGCTTGAGAAGTTTCTCTAATGGAAGAGCTTTAGGTGGACACATGAGATCACATGTGATGAACCTACCAAATTCTCCAAAACCAAATGAATCACCAACACCACCACCACCGGCAACGGTTCAACTTAGTTTCGAAGCTGAATCAGCTTCATCTCCATCATCTTACAGCCTAAGAGAGAATCCGAAACGAAGCTTTCGATTCACAGATCCCAATCAATTCATCGACGCTGGTTCGATAATTCTCCAGGAAGACCGAGGAAGTGAAACTGAATCTTCAAAGAATCCAACTGGTCCGCGATCCAAACGGGTCAAGAAAGTTGTTGATCCGATGAAAAACTCAGTACAGACAGCTCAGAACGAGTCTGTTTCTGTACTGAGTTCTTCATCGGATATAACAACCGAAGAAGACATCGCTTTTTGTCTCATATTATTGTCTCGCGACAATAACAACAATTGGAAAACTGAAGCACAACATCATCAACATCAAGAAGAACAAGAAGATGAACAGTACGAACAACAACAGGTCGAAGAAGATGAAGATGAAGACGTCGAGGAAGAAGAAGAAGAAGAGGAAGAAAGTGAAGCTGAATTTGAAGAAGAGGAAGAAGAAGAACTGAAACCATTGAAGAAGGTACGAGGAAGATACAAATGTGACACGTGTAACAAAGTGTTTCGTTCATATCAAGCACTTGGTGGACATAGAGCGAGTCACAAGAAGAATAAACAAGTTGCAGAAAGTGGTGGTGAATATTCAATTTCACAACATGATGAGAAAATTAACATTAATCAAAAAATGATCAATGTTAATAATAATATTAGTGAAAAGAAAATTCATGAGTGTCCAATTTGTTTTAGAGAATTTTCTTCAGGTCAAGCATTAGGTGGGCATAAGAGAACACATGGTCTTGGTATTGGAACATCATCAAGAGCAACAACAATAGCTGCTGTTACAACAACAACAACAACAAATGTTGAGGTTGTTCGAATAAGTTCCGCGAATTTCGGAGATAGTTTGTTAGATCTAAATCTTCCTGCTCCTATGGATGAAGATGGTGATGGTGATGATGATGATGATAGCCAAATTGAAGGTTCTGCTGTTTCCGATGCTGAATTTGTCAAACCTCATTAA 1155 0.3896 MMEKHKCKLCLRSFSNGRALGGHMRSHVMNLPNSPKPNESPTPPPPATVQLSFEAESASSPSSYSLRENPKRSFRFTDPNQFIDAGSIILQEDRGSETESSKNPTGPRSKRVKKVVDPMKNSVQTAQNESVSVLSSSSDITTEEDIAFCLILLSRDNNNNWKTEAQHHQHQEEQEDEQYEQQQVEEDEDEDVEEEEEEEEESEAEFEEEEEEELKPLKKVRGRYKCDTCNKVFRSYQALGGHRASHKKNKQVAESGGEYSISQHDEKININQKMINVNNNISEKKIHECPICFREFSSGQALGGHKRTHGLGIGTSSRATTIAAVTTTTTTNVEVVRISSANFGDSLLDLNLPAPMDEDGDGDDDDDSQIEGSAVSDAEFVKPH* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g0880 384 MobiDBLite consensus disorder prediction 163 215 - -
Mal7g0880 384 Pfam C2H2-type zinc finger 5 27 - -
Mal7g0880 384 Pfam C2H2-type zinc finger 223 248 - -
Mal7g0880 384 Pfam C2H2-type zinc finger 287 309 - -
Mal7g0880 384 Gene3D Classic Zinc Finger 221 309 - -
Mal7g0880 384 Coils Coil 179 214 - -
Mal7g0880 384 SUPERFAMILY beta-beta-alpha zinc fingers 223 309 IPR036236 -
Mal7g0880 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 251 IPR013087 -
Mal7g0880 384 SMART c2h2final6 287 309 IPR013087 -
Mal7g0880 384 SMART c2h2final6 224 246 IPR013087 -
Mal7g0880 384 SMART c2h2final6 5 27 IPR013087 -
Mal7g0880 384 MobiDBLite consensus disorder prediction 349 384 - -
Mal7g0880 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 287 309 IPR013087 -
Mal7g0880 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Mal7g0880 384 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 2 382 IPR044303 GO:0006355
Mal7g0880 384 MobiDBLite consensus disorder prediction 178 211 - -
Mal7g0880 384 ProSitePatterns Zinc finger C2H2 type domain signature. 226 246 IPR013087 -
Mal7g0880 384 MobiDBLite consensus disorder prediction 163 177 - -
Mal7g0880 384 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Mal7g0880 384 ProSitePatterns Zinc finger C2H2 type domain signature. 289 309 IPR013087 -
Mal7g0880 384 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 2 382 - -
Mal7g0880 384 MobiDBLite consensus disorder prediction 95 117 - -
Mal7g0880 384 MobiDBLite consensus disorder prediction 18 138 - -
Mal7g0880 384 MobiDBLite consensus disorder prediction 52 70 - -
Mal7g0880 384 MobiDBLite consensus disorder prediction 356 372 - -
Mal7g0880 384 MobiDBLite consensus disorder prediction 120 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g0880 Mal-Chr7 24027144 24028298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g0880 2 359 C2H2 Transcription Factor Family AT3G60580 38.147 1.20e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal7g0880 zf-C2H2_6 6.4e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g0880 - - aprc:113850450 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g1375 3 59627737 59631797 Mal7g0880 7 24027144 24028298 PCT