Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g0857 ATGGTCACATTTTTTACTACAAATGTTAGTTCTACCAAGCAATCTGAGATAGAAGGCATAGAAATGAATGTGATTGATCAATGTTGGAGATTCAATCCTGAATGGAGGAAACATCGACAACAACTTGCTATTTGCTCAGTGGGCTATGCGGGGAAAATGACAAACAACATTGGTAAAGATCTGATCCATTATAAAGTTACCGATCCTACATCTAAGATTCAAGGTAAAGTTTGGATCACATTCCAAAGGGATATGAACATTAAGCTTGTTGGACCCCTTCTCATTAGTAGTTTCACCACCATTGACGGTCGAGGCGTCGATGTACACATTGCAGATAATGCGTGCTTGATGATATATAAGGCAACCAACATAATCATCCATGGAATTAGGGTTCATCATTGTCGACCTCAAGCTCCTGGAATGGTGATGGGTCCTGATGGAAAGATAATGCCATTAGGTCACGTTGATGGAGATGCAATCAGATTGGTTTCTGCTTCAAAAATATGGATTGATCATAACACACTTTATGATTGTCAAGATGGTCTTCTAGACGTTACAAGAGGTTCCACTAATATAACAATCTCCAACAATTGGTTTAGAGAGCAAAATAAAGTTATGCTTCTTGGTCATGACGATGGATTTGTGAGAGACAAAAACATGAAAGTCACCGTTGTATACAACTATTTTGGACCTAATTGCCACCAGCGTATGCCTAGAATTCTTCATGGATATGCACATGTTGCAAATAATCTGTACATGGGATGGGTGCAATATGCAATAGGTGGAAGTATGGAACCAAGCCTTAAAAGTCAATCAAACCTCTTCATAGCACCAGCCACAGGAAAAAAGGAGGTGACATGGAGAAAAAGTAGTAACGGAATTGGAGATATGTGGGAATTTTATTCAGTTGGGGACACTTTTGAAAATGGAGCATCCTTCATGGAAACAAAAGGTGGACAAGTGACAAAACCGAATTATAACCCTGAACAAAATTTTGAAGTTGCTGATGCCAAATCTGTAAGATCATTAGCAAGATCATCTGGTGTGTTACAATGCAGTAAAACCTCAATATGTTGA 1077 0.3872 MVTFFTTNVSSTKQSEIEGIEMNVIDQCWRFNPEWRKHRQQLAICSVGYAGKMTNNIGKDLIHYKVTDPTSKIQGKVWITFQRDMNIKLVGPLLISSFTTIDGRGVDVHIADNACLMIYKATNIIIHGIRVHHCRPQAPGMVMGPDGKIMPLGHVDGDAIRLVSASKIWIDHNTLYDCQDGLLDVTRGSTNITISNNWFREQNKVMLLGHDDGFVRDKNMKVTVVYNYFGPNCHQRMPRILHGYAHVANNLYMGWVQYAIGGSMEPSLKSQSNLFIAPATGKKEVTWRKSSNGIGDMWEFYSVGDTFENGASFMETKGGQVTKPNYNPEQNFEVADAKSVRSLARSSGVLQCSKTSIC* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g0857 358 Pfam Pectate lyase 95 275 IPR002022 -
Mal7g0857 358 PANTHER PECTATE LYASE 18-RELATED 3 355 IPR045032 GO:0030570
Mal7g0857 358 PRINTS Pollen allergen Amb family signature 156 177 IPR018082 -
Mal7g0857 358 PRINTS Pollen allergen Amb family signature 329 352 IPR018082 -
Mal7g0857 358 PRINTS Pollen allergen Amb family signature 92 108 IPR018082 -
Mal7g0857 358 PRINTS Pollen allergen Amb family signature 298 322 IPR018082 -
Mal7g0857 358 PRINTS Pollen allergen Amb family signature 258 277 IPR018082 -
Mal7g0857 358 PRINTS Pollen allergen Amb family signature 236 255 IPR018082 -
Mal7g0857 358 PANTHER PECTATE LYASE 3 355 - -
Mal7g0857 358 Gene3D - 22 351 IPR012334 -
Mal7g0857 358 SMART amb_all 84 281 IPR002022 -
Mal7g0857 358 SUPERFAMILY Pectin lyase-like 17 350 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g0857 Mal-Chr7 23323139 23324884 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g0857 53 285 Polysaccharide Lyase AT5G09280 64.516 2.11e-123 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g0857 K01728 - gmx:100811216 630.557