Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g0682 ATGGGCAGTGTTGATACGGGGTTGACAGAGCAGGAAATCCTCATATGCATCAATGAAGAGATTTACCAGTTCAGTGCTAATGAAACCAGTACACCAAACCAAACCTGCACCATATGCCAGGAAGACTTTGTGGACGGGGAGCGTATTGGTAGACTTGATTGTATGCATATATATCATCTTGGCTGCATAAAACCATGGTTGGAGTTGAGGAATGCTTGTCCAATCTGTAAGCAGATAGCTCTGGAAATCAATGAAGAGAAGAATGAAAGTGAAGATTAA 279 0.4194 MGSVDTGLTEQEILICINEEIYQFSANETSTPNQTCTICQEDFVDGERIGRLDCMHIYHLGCIKPWLELRNACPICKQIALEINEEKNESED* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g0682 92 ProSiteProfiles Zinc finger RING-type profile. 36 77 IPR001841 -
Mal7g0682 92 SMART ring_2 36 76 IPR001841 -
Mal7g0682 92 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 82 IPR045191 GO:0061630
Mal7g0682 92 SUPERFAMILY RING/U-box 19 82 - -
Mal7g0682 92 Pfam Ring finger domain 35 77 IPR001841 -
Mal7g0682 92 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 82 IPR013083 -
Mal7g0682 92 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g0682 Mal-Chr7 18440636 18441574 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g0682 1 82 C3H Transcription Factor Family AT2G15530 40.000 5.03e-18 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g0682 - - mtr:MTR_3g025940 139.428