Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g0644 ATGGAAGAAAACAACGCATTCAAAGATCAACAACTTGTTCCAAACGAAGAAGAACAAGAAATCAACGAATCCTTTGTTTGCTGCGTTTGCTTGGATCTGTTATACAAGCCCATTGTGCTATCTTGTGGCCACGTATTATGTTTCTGGTGTGTCCATAGATCAATGAATAATTCACGCGAATCCCATTGTCCAACTTGTAGGCATCCATATTATCACTTTCCAACAATTTGTCAAATGTTTCACTTTTTGCTTCTTAAGACATATCCTGAAGCTTACAAGAGAAGGGAAAATCAGACACTTGAGGAAGAAGAGAAATCGGATTATTTCTCCCCTCAAGTTATATGTGATCAACCTGCAAATTCTCCTACCAGTACTACCATAAATCAGACGTCTAACTCATTCAGCACAGAATCTTTTGAAAGTATGGAGCAATCAGGGTCTGCAAATCATAAAGGAGATGAAGGCATCACTTCTGAATACTCTTCTGACAGGAGAGATGGAATTATAATGTCTCAAAATGAGCACAATCAACAACCAAAAATATTAGTTGAAGATTTAATGTGTTCAATGTGCAAGCAACTGCTCATTCATCCTGTTGCTCTTAATTGTGGTCATGTATACTGTGGGACTTGTATTACCGACTTATCTCATGAGATGCTTAGATGTCAAGTTTGCCAAAGTCCACATCCTGGAGGATTTCCAAAAGTTTGTTTGGCTCTTGACCAATATTTAGAGGAGCAATTTCCAGAAGAGTACACACAGAGAAGAGATGCAATTCAACTTAGCCAAATCAAAGTCCAACTTGAGACCACATCTTCTTGTTCATTGTCTAAGGACACTGGGGAAAAGATAGATTGGGGGTCTAGTCCTGGATTGTTAGTTCACAGAGGAGTTGGTTGTGATTTTTGCGGGTTGTACCCAATAATCGGGGACAGATATAGATGTGTTGACTGTGAAGAGATTGTCGGCTTTGATCTTTGTGGTGATTGCTATAAGAACCGCTCAAAGCGTCCGGGACGATTTAATCAGAATCACACCCCAGACCACAAGTTCGAGCTTGTACAATATCGAGGAATGCTAATTAGCCGTGGACAAGATTCTTCGGATTTAATAGTTTTACCGGATGATCCTGATTCCTCGACTGATGAAGAATAA 1155 0.3965 MEENNAFKDQQLVPNEEEQEINESFVCCVCLDLLYKPIVLSCGHVLCFWCVHRSMNNSRESHCPTCRHPYYHFPTICQMFHFLLLKTYPEAYKRRENQTLEEEEKSDYFSPQVICDQPANSPTSTTINQTSNSFSTESFESMEQSGSANHKGDEGITSEYSSDRRDGIIMSQNEHNQQPKILVEDLMCSMCKQLLIHPVALNCGHVYCGTCITDLSHEMLRCQVCQSPHPGGFPKVCLALDQYLEEQFPEEYTQRRDAIQLSQIKVQLETTSSCSLSKDTGEKIDWGSSPGLLVHRGVGCDFCGLYPIIGDRYRCVDCEEIVGFDLCGDCYKNRSKRPGRFNQNHTPDHKFELVQYRGMLISRGQDSSDLIVLPDDPDSSTDEE* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g0644 384 SUPERFAMILY RING/U-box 290 354 - -
Mal7g0644 384 ProSiteProfiles Zinc finger ZZ-type profile. 295 359 IPR000433 GO:0008270
Mal7g0644 384 Pfam Zinc finger, ZZ type 295 336 IPR000433 GO:0008270
Mal7g0644 384 Gene3D - 292 355 IPR043145 -
Mal7g0644 384 ProSitePatterns Zinc finger RING-type signature. 42 51 IPR017907 -
Mal7g0644 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 255 IPR013083 -
Mal7g0644 384 ProSiteProfiles Zinc finger RING-type profile. 188 226 IPR001841 -
Mal7g0644 384 SMART ring_2 188 225 IPR001841 -
Mal7g0644 384 SMART ring_2 27 66 IPR001841 -
Mal7g0644 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 118 IPR013083 -
Mal7g0644 384 MobiDBLite consensus disorder prediction 119 155 - -
Mal7g0644 384 MobiDBLite consensus disorder prediction 119 160 - -
Mal7g0644 384 SUPERFAMILY RING/U-box 180 248 - -
Mal7g0644 384 ProSiteProfiles Zinc finger RING-type profile. 27 67 IPR001841 -
Mal7g0644 384 Pfam Zinc finger, C3HC4 type (RING finger) 26 70 - -
Mal7g0644 384 SUPERFAMILY RING/U-box 19 77 - -
Mal7g0644 384 PANTHER UNCHARACTERIZED 13 366 - -
Mal7g0644 384 Pfam RING-type zinc-finger 188 216 IPR027370 -
Mal7g0644 384 ProSitePatterns Zinc finger RING-type signature. 203 212 IPR017907 -
Mal7g0644 384 SMART zz_5 294 340 IPR000433 GO:0008270
Mal7g0644 384 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE 13 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g0644 Mal-Chr7 17115154 17126045 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g0644 17 67 C3H Transcription Factor Family AT1G74990 38.462 6.19e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g0644 - - mtr:MTR_4g022320 660.988