Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g0328 ATGGTGAAGCAGATGCCTAATGATAAGATATGTGATGTTTCTGGGAAAGAGTCATGGAGGTTGGTTGCTCGTGTTGTTAGGGTCTGGGAAGTTCCAATGTTTCTCAACCCTGAGCAGATAAGTTCAATTGAAATGGTTTTGGTTGATGAAATGGGTGACAAAATCCATGCAACTATAAGGAGGCAACTAATGTATCTTTTTCAGAAGAAGATTGTTGAAGGGGAAGTTTACAAGTTGTCATATTTTTCGGTTATTCCAAATTCTGGTACTTACCGGACAACAAAACATGCATACAAACTCATGTTCCAGATGAAAACTAAGTTGACAGTTTGTGCTGCACCTTCAATTTCTAAATATGGCTTGTCATTTACTCCTTTAGCTGAAGTTATTAATCATACTCATGATTATGAGTTTTTGGTTGATGTTATTGGATTGATGACTGGAATTTCTGATGAAAGGGAGTATATTAGAGATGGAAAAATTACTAAAATGATTGTTGTTGAATTAACTGATGGGAGTGGTAAATGTGAGTGTGCTTTGTTTGGGGACTATGTTGATGATTTGAAGAAGATGATGGGTAAAGATGCTGATGGGAAGCTTATTGTTGTTGTGCAATTTGCAAAGATAAAGATATTCAGGGATAAAGCTTCTATTCAAAATGTTATTAGTACAACAAAGGTTTATGTTAATCCTGACTTTCCAGAAGCTCTGAAGTTCAAAGAGAGTTTGGCTGCTGTTGCTGATGATGGCAATATATCTATTCCTTTGATTGGAAGTACTGTTAAGCCAAATTTGGAGAGTGATTTTTTTACTATGGAAACTGGAAAGACTCTTCATGAGTTGGAGAACTTTGCTGAGGATGGAATTTATGTGGTGTATGCTAGAATTGATGGTGTTGTTCCTGGTGAAGATTGGTGGTATCCTGCTTGCAAATGTCATAGGAGTGTAATGCTTGATTCTGGTGCATATTTTTGCAAGGGTTGTGCGAAGCATGTTTTTAACATGATTCCTAGGTTTAAGCTGAAGTTGGAAGTTTCGGATGGAACTGACTCAGGAGTTTTTGTTCTATTTGATACTGATGTCCAATTTTTGATGGGGAAGCAGTGTGTTGCATTGATTAATGATTTAAAGCCTGAGGATGTTGATCAAAAGCCAAGTTGTTTTGATGAGTTGAATGGCAAGAAGTTGCTGTTTAAGGTTGAGAAGTGTACTGTTGTGAACCCTATCTTTGATGGCTCTTATAAAGTTAGGAGGGTTTGTACTGATCCAAATATTATTGAAAAATTTGTGAAGTCTTATTATGATGAAGACATTGATGAAGAATTTTTATCTGATCTTATAGTTACTCCAGGCCTTGATGACTTAGCAAATCTTTCAACTCTTGCTGAAAATGTTTGTACTGAAGTAGAAGGGGGTGTCAATTTAAAGAGGAATTTGGGTGAGGAGTTAGAAAATGTTGGCAAAGTTGGTTCAAGGAAGAGGTTGAGGAAAGTGAAGATAGAAAAAGATTGA 1512 0.3638 MVKQMPNDKICDVSGKESWRLVARVVRVWEVPMFLNPEQISSIEMVLVDEMGDKIHATIRRQLMYLFQKKIVEGEVYKLSYFSVIPNSGTYRTTKHAYKLMFQMKTKLTVCAAPSISKYGLSFTPLAEVINHTHDYEFLVDVIGLMTGISDEREYIRDGKITKMIVVELTDGSGKCECALFGDYVDDLKKMMGKDADGKLIVVVQFAKIKIFRDKASIQNVISTTKVYVNPDFPEALKFKESLAAVADDGNISIPLIGSTVKPNLESDFFTMETGKTLHELENFAEDGIYVVYARIDGVVPGEDWWYPACKCHRSVMLDSGAYFCKGCAKHVFNMIPRFKLKLEVSDGTDSGVFVLFDTDVQFLMGKQCVALINDLKPEDVDQKPSCFDELNGKKLLFKVEKCTVVNPIFDGSYKVRRVCTDPNIIEKFVKSYYDEDIDEEFLSDLIVTPGLDDLANLSTLAENVCTEVEGGVNLKRNLGEELENVGKVGSRKRLRKVKIEKD* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g0328 503 Pfam Replication factor-A C terminal domain 301 401 IPR013955 -
Mal7g0328 503 Gene3D - 115 249 IPR012340 -
Mal7g0328 503 CDD RPA1_DBD_B_like 141 243 - -
Mal7g0328 503 CDD RPA1_DBD_C 276 407 IPR013955 -
Mal7g0328 503 SUPERFAMILY Nucleic acid-binding proteins 121 243 IPR012340 -
Mal7g0328 503 Pfam Domain of unknown function DUF223 44 138 IPR003871 -
Mal7g0328 503 PANTHER REPLICATION FACTOR A 1, RFA1 14 370 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal7g0328 503 Gene3D - 9 111 IPR012340 -
Mal7g0328 503 Gene3D - 266 419 IPR012340 -
Mal7g0328 503 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 14 370 - -
Mal7g0328 503 SUPERFAMILY Nucleic acid-binding proteins 285 409 IPR012340 -
Mal7g0328 503 CDD RPA1_DBD_A_like 20 107 - -
Mal7g0328 503 SUPERFAMILY Nucleic acid-binding proteins 5 112 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g0328 Mal-Chr7 7201986 7204251 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g0328 47 400 Core DNA Replication Machinery Family AT5G08020 23.989 4.92e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g0328 - - mtr:MTR_8g062030 477.248