LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal7g0149	ATGGCAAGAGAAGGTTTTGGACTTGAAATAACCGAGCTAAGGTTGGGTTTACCATGTGGTGAGCCACAGAAGAATGAGAAGAAGAGGATGTTCTTTGAGATTGACGGTGGTGGGGAAGAAAATGGAGGTTCCGGTGACCCGAAAATTGAGAAGAAGAATCAAGTTGTGGGATGGCCTCCGGTATGTTCGTACCGGAAGAAGAACATGAATGAAGGTTCAAAAATGTACATGAAAGTTAGCATGGATGGAGCTCCTTACTTGCGTAAGATTGATCTTGGTTTGCATAAGGGATATTTGGAGTTAGCTTTGGCTTTGGAGAAGCTCTTTGGTTGTTGTAGAATTGAGGAGGCTTTGAAGGATGCAGACAATTGTGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTCCCTTGGGAGATGTTTATTGAATCATGCAAGAGGCTGAGGATTATGAAGAGATCAGATGCAAAGGGCTTCGGATTGCAACCAAAAGGATCTTTAAAGAGATTCATATAG	537	0.4302	MAREGFGLEITELRLGLPCGEPQKNEKKRMFFEIDGGGEENGGSGDPKIEKKNQVVGWPPVCSYRKKNMNEGSKMYMKVSMDGAPYLRKIDLGLHKGYLELALALEKLFGCCRIEEALKDADNCEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFGLQPKGSLKRFI*	179

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal7g0149	178	PANTHER	AUXIN-RESPONSIVE PROTEIN IAA17	4	166	IPR003311	GO:0005634\|GO:0006355
	Mal7g0149	178	Pfam	AUX/IAA family	50	166	IPR033389	-
	Mal7g0149	178	ProSiteProfiles	PB1 domain profile.	74	162	IPR000270	GO:0005515
	Mal7g0149	178	Gene3D	-	68	171	-	-
	Mal7g0149	178	PANTHER	AUXIN-RESPONSIVE PROTEIN IAA6	4	166	-	-
	Mal7g0149	178	SUPERFAMILY	CAD & PB1 domains	67	159	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal7g0149	Mal-Chr7	3503486	3508029	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal7g0149	6	164	B3 DNA Binding Superfamily	AT4G23980	31.325	7.05e-11	58.2

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	AUX/IAA	Mal7g0149		AUX_IAA	2.4e-43	CL0072

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal7g0149	K14484		-	gmx:547784	276.559

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal7g0149	7	3503486	3508029	Mal7g0149	7	3503486	3508029	ECH