Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g4648 ATGGTAAGACCACCATGTTGTGATAAAGAAGGTGTGAAAAAAGGACCTTGGACTCCTGAAGAAGATATCATTTTGGTTTCTTATATTCAAGAACATGGTCCTGGAAATTGGAAAGCTGTTCCTACCAATACTGGTTTGTTAAGGTGTAGTAAGAGTTGCAGACTAAGATGGACTAATTATCTAAGGCCAGGAATCAAAAGGGGTAACTTCACTGATCAAGAAGAGAAAATGATTATCCATCTTCAAGCTCTTTTAGGAAACAGATGGGCTGCAATAGCTGCATACCTTCCACAAAGAACAGATAATGACATAAAAAATTATTGGAACACTTATTTGAAGAAAAAGCTCAAGAAATTAGAAACAAGTACTTCTTCTGAATCATGTTTAGGGCAAGAGTTTTCTGTTTCTCAACCAATAGCTAGAGGACAATGGGAAAGAAGGCTTCAAACTGATATTCACATGGCCAAAAAAGCACTTAGTGAAGCACTTCAACCAGAAAAAAGCACTTCTGGCACCAACTTATTATTACCACTTGAATCAAATTTTTCTAGTGAAAGCTCTTTTTGTTCAACAAAACCTACAACACAATCTTTGTCTTATGCTTCAAGTGCTGATAACATAGCTCGTTTATTGAAAGGTTGGATGAAAAATAAACCAAAAGGATCAAATGGTAATAATTCATATGTGACACAAAATTATGAAACTAGTGCTTCTAGTGAAGGAATGGAAAAAGGGTCAACAAGTGCTGAATTATCTGAGACATTTGAATCTATGTTTGGTTATGAGAGTTTTGATTCTTCAAATTCAGATTCTACTACACTTTTTCAAGATGAGAGCAAACCTGAAAATATTGGTGGTGAAATTATGCCTTTCTCTTTGCTTGAAAAATGGCTTCTAGATGATGGTGGTTGTCAAGAGAAAGTTGGTCTTAGTGAAATGAATTACATATTTTGA 954 0.3491 MVRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWKAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKKLKKLETSTSSESCLGQEFSVSQPIARGQWERRLQTDIHMAKKALSEALQPEKSTSGTNLLLPLESNFSSESSFCSTKPTTQSLSYASSADNIARLLKGWMKNKPKGSNGNNSYVTQNYETSASSEGMEKGSTSAELSETFESMFGYESFDSSNSDSTTLFQDESKPENIGGEIMPFSLLEKWLLDDGGCQEKVGLSEMNYIF* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g4648 317 Gene3D - 69 132 - -
Mal6g4648 317 CDD SANT 16 61 IPR001005 -
Mal6g4648 317 Gene3D - 13 66 - -
Mal6g4648 317 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 311 - -
Mal6g4648 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Mal6g4648 317 CDD SANT 69 111 IPR001005 -
Mal6g4648 317 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 311 - -
Mal6g4648 317 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mal6g4648 317 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Mal6g4648 317 SMART sant 66 114 IPR001005 -
Mal6g4648 317 SMART sant 13 63 IPR001005 -
Mal6g4648 317 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mal6g4648 317 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mal6g4648 317 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mal6g4648 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g4648 Mal-Chr6 130868285 130870176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g4648 1 311 MYB Transcription Factor Family AT5G62470 51.412 1.62e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal6g4648 Myb_DNA-binding 4.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g4648 K09422 - gmx:778080 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g4648 6 130868285 130870176 Mal3g0169 3 6134232 6135992 PCT