Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g4646 ATGATGGAGGTTTTAACAACAACAACAACAACCACCACAAACACAAACTCCACAAACACAAACATAATCACTACTACACCTTTAACAACAACAAATTCAACAAAACTACATGAACCCGAATCAGAAAACCCGACCCGAATCCAACAACCCATAATCTCAAACATAACAAAACCTTTGTCTTTTTCAAATGGTGTTCTAAAACGCCACCACCCAAACAACCACCACAATAACCTTAACAATCTCAACAACAACGTTGTTGTTACTTACAAAGAATGTCTCAAAAACCACGTGGCAAACCTAGGTGGTCATGCACTAGATGGTTGTTGTGAATTCATGCCATCACCAACCGCCACTTCCGATGACCCTGCCTCCATAAAATGCGCCGCATGCGGTTGTCACCGGAATTTCCACCGCCGTGAACCGGAAGAACCAATTTCAACCGTTTTTGAATATCAACCTCACCACCGTCACCACCCACCACCGCCACCACTTTTTCAGTCACGTTCACCAAGCTCACCGTCACCACCGCCGATCTCATCATACCCATCAGCTCCACATATGCTCTTAGCACTCTCCGGCGCCGGAGTTGGTCTCTCTATCCCACCGGAAAACACAGCTGCACCGTTAAACCTTTCTTCACCGATGGGATCAAGTAGAAAAAGATTCAGAACAAAATTCACACAAGAACAGAAGGAGAAGATGCATGAATTTGCTGAGAAAGTTGGGTGGAAGATGCAGAAGAGAGATGAAGAAATGGTGAATGGTTTTTGCAATGAAGTTGGTGTTGATAGAAGTGTGCTCAAAGTTTGGATGCATAATAATAAGAACACTTTGGGAAGAAAATTGTCTTTAGATCATGTTAATGGTGACGGCGGCGCCGTGAACGCCGCCTTGGACGGTGGCTCCGGTGGTGGTAGTGAGAATGAGAATAATGGGACTAATGTTGCTGCTTGTGCTACTAATGGGTCTTCTTCTTCTTCTTGA 984 0.4451 MMEVLTTTTTTTTNTNSTNTNIITTTPLTTTNSTKLHEPESENPTRIQQPIISNITKPLSFSNGVLKRHHPNNHHNNLNNLNNNVVVTYKECLKNHVANLGGHALDGCCEFMPSPTATSDDPASIKCAACGCHRNFHRREPEEPISTVFEYQPHHRHHPPPPPLFQSRSPSSPSPPPISSYPSAPHMLLALSGAGVGLSIPPENTAAPLNLSSPMGSSRKRFRTKFTQEQKEKMHEFAEKVGWKMQKRDEEMVNGFCNEVGVDRSVLKVWMHNNKNTLGRKLSLDHVNGDGGAVNAALDGGSGGGSENENNGTNVAACATNGSSSSS* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g4646 327 Gene3D - 210 279 - -
Mal6g4646 327 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 219 276 IPR006455 -
Mal6g4646 327 MobiDBLite consensus disorder prediction 304 327 - -
Mal6g4646 327 MobiDBLite consensus disorder prediction 298 327 - -
Mal6g4646 327 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 89 140 IPR006456 -
Mal6g4646 327 MobiDBLite consensus disorder prediction 152 181 - -
Mal6g4646 327 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 17 285 - -
Mal6g4646 327 MobiDBLite consensus disorder prediction 158 181 - -
Mal6g4646 327 Pfam ZF-HD protein dimerisation region 87 141 IPR006456 -
Mal6g4646 327 SUPERFAMILY Homeodomain-like 210 280 IPR009057 -
Mal6g4646 327 MobiDBLite consensus disorder prediction 1 44 - -
Mal6g4646 327 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 17 285 - -
Mal6g4646 327 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 88 140 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g4646 Mal-Chr6 130713758 130714741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g4646 2 275 ZF-HD Transcription Factor Family AT5G15210 49.645 6.85e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mal6g4646 ZF-HD_dimer 2.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g4646 - - gmx:100814730 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g4646 6 130713758 130714741 Mal6g4646 6 130713758 130714741 ECH
Mal6g4646 6 130713758 130714741 Mal3g0171 3 6205591 6206607 PCT