Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g4627 ATGGGACGTTCACCATGTTGTGACAAAGTTGGTTTAAAGAAAGGTCCATGGACTCCAGAAGAAGATCAAAAACTCTTAGCTTATATTGAAGAACATGGTCATGGAAGTTGGCGTGCTTTGCCGGCTAAAGCTGGGCTTCAAAGATGTGGTAAGAGCTGCAGATTAAGATGGACTAATTATCTTAGGCCTGATATTAAGAGAGGAAAGTTTAGTTTGCAAGAAGAACAAACCATTATTCAACTCCATGCTCTCTTAGGGAACAGGTGGTCAGCTATAGCAACACATTTGGCAAAGAGAACAGATAATGAGATAAAGAATTATTGGAACACACATCTTAAGAAAAGGTTAACAAAAATGGGAATTGATCCTGTTACACACAAGCCTAAAAATGATGCTCTTCTTTCATCAAGTGATAATGCTCATTCCAAAACTGCTTCAAATCTTAGTCACATGGCTCAATGGGAAAGTGCTCGTCTTGAAGCTGAAGCTAGACTTGTTAGAGAATCCAAAATTCGTTCACATAATTCACTTCTTCATCATAATCACTTGAAAGCTTGGAATGTTAATCTTGAGTCTCCTACTTCAACTTTATCTTTCAATGAGAATGTTCCACCAATTATGATTAGTGGAGAAAATATTGGAGGTGCAAATAGCAACAAAAACAACAATGATAATGAGAAAAACAATAATAATGATGACAACAATGTTGTTGTGTCTATGATTGAGTTTGTAGGAACAAATTCAAGCTCAATTGTGAAAGAAGAAGGTGGTGATGATCAAGAACAATGGAAAGGTTATGAAAGTTCATTGACTTTTACATCAAATCTTCATCATGAGTTGACTATGTCAATGGATCAAGGTGTTGATGATGTCATTGCTGAAGAAGGGTTTACTAATCTTTTGCTTAAGACAAATTCTGAAGACTTGAGTTTGTCAGAGAGTGGAGGTGAATCTAACAATGGTGGTGATGGTGGAAGTGGAAGTGAAATCTATGAAGATAACAATAACTACTGGAATAGTATTCTTAATTTAGTTAATTCTTCTCCCTCTGATTCACCAATGTTTTGA 1068 0.3596 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLAKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSSDNAHSKTASNLSHMAQWESARLEAEARLVRESKIRSHNSLLHHNHLKAWNVNLESPTSTLSFNENVPPIMISGENIGGANSNKNNNDNEKNNNNDDNNVVVSMIEFVGTNSSSIVKEEGGDDQEQWKGYESSLTFTSNLHHELTMSMDQGVDDVIAEEGFTNLLLKTNSEDLSLSESGGESNNGGDGGSGSEIYEDNNNYWNSILNLVNSSPSDSPMF* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g4627 355 CDD SANT 69 112 IPR001005 -
Mal6g4627 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mal6g4627 355 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Mal6g4627 355 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mal6g4627 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mal6g4627 355 CDD SANT 16 61 IPR001005 -
Mal6g4627 355 Gene3D - 13 66 - -
Mal6g4627 355 MobiDBLite consensus disorder prediction 308 330 - -
Mal6g4627 355 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mal6g4627 355 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 351 - -
Mal6g4627 355 MobiDBLite consensus disorder prediction 210 233 - -
Mal6g4627 355 Gene3D - 69 116 - -
Mal6g4627 355 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mal6g4627 355 MobiDBLite consensus disorder prediction 212 233 - -
Mal6g4627 355 SMART sant 13 63 IPR001005 -
Mal6g4627 355 SMART sant 66 114 IPR001005 -
Mal6g4627 355 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mal6g4627 355 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g4627 Mal-Chr6 130202213 130204859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g4627 1 355 MYB Transcription Factor Family AT3G01140 54.856 3.85e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal6g4627 Myb_DNA-binding 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g4627 K09422 - gmx:100101835 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g4627 6 130202213 130204859 Mal6g4627 6 130202213 130204859 ECH