Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g4609 ATGGCAAGGAAGAGAAAGGTTTCTGAAGCAGTTGAAGAAGGAAGCATGGTTTGGGATGATATGATGAAAGAAGCTGCATCACTTGGAGGAGCTAGGCGAGTCCGAAAGAGATTTGTCGGTGTTCGACAAAGGCCATCGGGTAGATGGGTTGCTGAGATTAAAGATACCATTCAAAAGATAAGAGTTTGGTTAGGAACTTTTGATACAGCTGAAGAAGCTGCAAGAGCTTATGATGAGGCTGCTTGTTTGCTTCGCGGCGCAAACACTCGGACAAATTTCTGGCCTTGTTCACAATCTTCAACTAGTCCTGCTCTTTCTTCAAAGATCACCAATCTCCTCCTTCAAAGACTTAAAGAGAGGAATATGAATAATTCTTGTTCTTCCTTTTCTTCGTCGAAATACACTTCCCTGTTGGGAAGTTCAGGGGAGCGTAGGGAGCAACAACGAGCTAATGATCAGGATCATCAGGAGATGCAACAACAAGTGAATTCATACGGAGAAGTATCGAAAGATTTCTCAATTGATCAATTCACTGATTTCCTTAATGATCATGAGGATTATAGCACAAGCAACAATGAATTCATCAATGACACTGCACAATTCGATTACATTTCGAGTAGTTTTGAATCGTGTTTAACCGAAAACAATGGCTGCAAGGAGGATGCAATGAATATGGAATCTAAATCAAACAATGTGACACAAACTTCAAGTGATGATAGCAATTCAGAAGATGGTGAAGAGGAAGTCAATAATGATGTAGGTGTTGATGTTCCTGATTTTCGGTTTCTCGACGATATTGCTCCAACTAGTTACTACTCACCTTTTGAGATTGCTGAAGAAATGGAAGAGCAAATGGAGACAGAGAGCTTTTGTGATGAGCCTTCAATGATTAGAGCTGTTATGAAGAGAATGAAATATGAGAGAAAATTTTCAGCTTCACTTTATGCATTCAATGGAATACCTGAATGCTTGAAGTTGAAACTTGAATCAGGAAACAATAATGGAAGAGGAATTTCTGATCAATTGAACAATCTCAAGGAAGCATGTAACAAAAATAAACTTGAGAAGAAGAAGAAGGTGGATGAGAAAAATGAAGAAAATCATCAAATTTCAACTGAAATGGAGTCTTCTTGTTTGTCAAGTAATGATGGTGATCTTTTTCTATGGAATTCACTTGATCTTCCTCCTATTTGTTTTGTTAACTTACTTGAAAATGGTTCATTCAATTAG 1230 0.3805 MARKRKVSEAVEEGSMVWDDMMKEAASLGGARRVRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSTSPALSSKITNLLLQRLKERNMNNSCSSFSSSKYTSLLGSSGERREQQRANDQDHQEMQQQVNSYGEVSKDFSIDQFTDFLNDHEDYSTSNNEFINDTAQFDYISSSFESCLTENNGCKEDAMNMESKSNNVTQTSSDDSNSEDGEEEVNNDVGVDVPDFRFLDDIAPTSYYSPFEIAEEMEEQMETESFCDEPSMIRAVMKRMKYERKFSASLYAFNGIPECLKLKLESGNNNGRGISDQLNNLKEACNKNKLEKKKKVDEKNEENHQISTEMESSCLSSNDGDLFLWNSLDLPPICFVNLLENGSFN* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g4609 409 CDD AP2 36 93 IPR001471 GO:0003700|GO:0006355
Mal6g4609 409 MobiDBLite consensus disorder prediction 357 378 - -
Mal6g4609 409 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Mal6g4609 409 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 8 349 - -
Mal6g4609 409 Coils Coil 346 366 - -
Mal6g4609 409 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Mal6g4609 409 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Mal6g4609 409 MobiDBLite consensus disorder prediction 222 252 - -
Mal6g4609 409 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Mal6g4609 409 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Mal6g4609 409 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Mal6g4609 409 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 8 349 - -
Mal6g4609 409 MobiDBLite consensus disorder prediction 124 144 - -
Mal6g4609 409 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Mal6g4609 409 MobiDBLite consensus disorder prediction 124 164 - -
Mal6g4609 409 MobiDBLite consensus disorder prediction 222 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g4609 Mal-Chr6 129923109 129924338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g4609 35 113 AP2-EREBP Transcription Factor Family AT5G19790 73.418 1.06e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal6g4609 AP2 8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g4609 K09286 - gmx:100790398 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g4609 6 129923109 129924338 Mal6g4609 6 129923109 129924338 ECH