Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g4596 ATGGAATCACAGATTAAGCACGCTATTGTTGAGAAAGTTATGGGACGTACTGGATCCAGAGGACAGGTCACTCAGGTTAGAGTCAAGTTTATGGAGGATCAGAATCGCCACATCATGAGGAATGTGAAAGGTCCCGTTAGAGAAGGAGACGTTCTCACCCTACTTGAGTCCGAGAGAGAAGCAAGAAGGCTCCGATAG 198 0.4697 MESQIKHAIVEKVMGRTGSRGQVTQVRVKFMEDQNRHIMRNVKGPVREGDVLTLLESEREARRLR* 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g4596 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Mal6g4596 65 Hamap 30S ribosomal protein S28e [rps28e]. 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Mal6g4596 65 Pfam Ribosomal protein S28e 4 64 IPR000289 GO:0003735|GO:0005840|GO:0006412
Mal6g4596 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 - -
Mal6g4596 65 ProSitePatterns Ribosomal protein S28e signature. 56 64 IPR028626 -
Mal6g4596 65 SUPERFAMILY Nucleic acid-binding proteins 2 65 IPR012340 -
Mal6g4596 65 CDD S1_S28E 6 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Mal6g4596 65 Gene3D - 1 65 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g4596 Mal-Chr6 129779763 129779960 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g4596 1 65 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 86.154 4.05e-35 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g4596 K02979 - gmx:100811085 97.8265