LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal6g4591	ATGGCGGCGACGACTGCGAAACCTCAACGAACTCCACAGGAAGTGGAAGACATCATCATCCGCAAAATCTTCCACGTCAGCATCACCGGAGAATCAACAACCACCACCGGAGCAACGGATTCGAGAATCGTTTATCTCGAACTAACCGCCGCCGAAATTCTCAGCGAAGGAAAAGACCTTCTCCTCTCTCGCGATGTAATGGAACGCGTCTTGATCGATCGTCTCTCCGGCGATTTCACCGTTGCCGGAGCCGAATCCTCACCGTTTAACTATCTCCTCGGTTGTTACAACCGCGCTCACGATGAATCGAAGAAAATCGTTAACATGAAAGATAAAAACCTTAGGTCAGAAATCGAAACTGTGATTAAACAAGCGAAGAAACTCTGCGTTTCGTATTGTAGGATTCACCTCGCGAATCCTGAGCTTTTTAGCAAGAATTCGAGTTCCAGCACCGGAGTTGGAAACTCTGGCGCTGGAGCATCGCCGTTACTGCCTCTGATTATATCAGAGTGCGGTGGCGGTGGTGGAATGGGAGTTTTCGGCAGTGGAAGTTCCACCGCCGGAGTAAAGAGTCCACCGGGGTTTTTGGATGAGTTTTTTAGGGATAGTGATTTTGAGAGTTTGGATAGGATATTGAAAGGGTTGTATGAGGAATTGAGAGGGAGTGTGATGAAGGTATCTGTGCTAGGGAATTTTCAGGATTCGCTTAGGGTTTTGTTGTTTTTGGTTAGGTTACCTATAGGTGCAAAGTCTCTTGTGAGTCATGAATGGTGGATTCCTAAAGGTGTTTATATGAATGGTCGTGCTATTGAAATGACTAGCATTTTGGGTCCTTTTTTTCATATTAGTGCACTTCCTGATCAAACCTTCTTCAAGAGCACGCCGGATATTGGGCAGCAGTGTTTTTCTGATGCTTCAACTCGGCGACCATCTGATTTATTATCTTCTTTCACCACCATCAAAACTGTCATGAATACCTTATATGATGGTCTATCTGAAGTACTCCGCAACCTCCTTAGAAGTACAGATACTCGTGAAAATGTACTTGAGTATCTTGCAGAAGTGATCAATTTAAACGCATCTAGGGCTCAGATACAGGTTGACCCAATTACTTGTGCAAGTTCAGGCATGTTTGTAAATCTCAGTGCTGTCATGCTTCGCCTCTGCGAACCATTTTTAGATGCAAATTTAACTAAAAGGGATAAAATTGATGCTAAATATGTACACCACTCAAACCGTTTGAAGCTAAGTGGGTTGACTGCCCTTCATGCGTCATCAGAAGAAGTTACTGAATGGCTTGATAGTAAAAACCCAGTTAAGGCAGGAGAAATGAATCAACATAATGATGGCGAGAAACGTCTGCAACAATCTCAAGAGGCCAGTAGTTCTGGTAGTAATATTGCTAGTACAAAATATTCATTTATATGTGAATGCTTCTTTATGACTGCAAGAGTGCTCAATTTGGGGCTTTTAAAAGCATTTTCTGACTTCAAACACTTAGTTCAGGATATTTCTAGAAGCGAAGATACTCTTTCCACACTTAAAACCATGCAGGAGCAGTCACCCTCTCCTCAATTGGCATTGGATATAACTCGACTTGAGAAAGAACTGGAGTTGCATTCGCAAGAGAAACTTTGCTATGAAGCTCAAATATTGAGGGATAATACACTTATCCAGAATGCACTTTCCTTCTACCGCTTGATGATCGTCTGGTTGGTTGGCTTGGTTGGTGGATTTAAGATGCCTCTACCACATCCATGCCCAATGGAATTTTCTACCATGCCTGAACATTTTGTAGAAGATACCCTAGAACTTCTAATTTTTGCTTCCCGGATTCCAAAGGCTTTAGATGGAGTCGTGCTGGATGAGTTTATGAACTTCATAATTATGTTTATGGGTAGCCCTGATTTTATCAAAAACCCATATCTGAGAGCCAAGATGGTTGAAGTTCTGAACAACTGGATGCCTCGTAGCAGTGGCTCATCTGCTACATCTACTCTATTTGAAGGGCACCAACTGTCTCTTGAGTATCTTGTGAAGAATCTTCTGAAACTTTATGTTGACATTGAGTTCACTGGTTCTCACACGCAGTTCTACGACAAGTTTAACATCCGCCATAATATTGCCGAGCTCCTTGAGTACCTGTGGAATGTCCCTAGTCATCGTAATGCCTGGAGACAGATTGCTAAAGAGGAGGAAAAGGGTGTCTATCTCAATTTCTTGAACTTCCTGATTAATGATAGTATTTATCTTCTTGACGAAAGTCTGAACAAAATTCTTGAGCTAAAAGAATTGGAAGCTGAGATGTCAAATACTGCTGAATGGGAGCGGCGGCCAGTTCAAGAGAGGCAGGAGAGGACCCGATTATTCCACTCTCAAGAAAATATTATTCGGATAGATATGAAATTGGCAAATGAAGATGTCAGCATGCTTGCATTCACTTCAGAGCAGATTACTGCTCCATTCCTGCTTCCTGAGATGGTTGATAGAGTGGCCAGCATGCTCAATTACTTTCTGCTGCAATTGGTTGGTCCCCAAAGAAAATCGCTCAGTCTGAAAGATCCTGAAAAATATGAATTTCGTCCAAAGCATTTGCTTAAACAGATTGTGCACGTATATGTTCATTTGGCCAGAGGTGACACAAATTCCATCTTCCCATCTGCCATCTCAAAGGATGGCCGATCATACAATGATCAGTTGTTTAGCTCAGCTGCGGATGTCCTTCGTAGAATTGGTGAGGATGGAAGAATTATACAGGAATTTATTCAGCTCGGTGCTAAAGCCAAAGTTGCTGCTTCAGAGGCCATGGATGCTGAAGCTACTCTAGGAGAAATACCAGATGAATTCCTTGATCCAATTCAATACACTTTGATGAAGGATCCAGTTATCTTGCCTTCTTCAAGAATCACGGTTGACCGTCCTGTCATCCAGAGGCATCTTCTCAGTGACAGCACTGACCCATTCAACCGTTCTCAACTTACCGCCGATATGCTGATTCCTGATGTTGAACTCAAAGCAAAAATTGAAGAGTTTATCAGGTCTCAGGAAATGAAGAAACATGGCGAAAGCCTAAACATACAAAGTTCTAAGGCCACCATTCAAACTACAGATACTGCGGAAATGTTGATTGATTAG	3135	0.4258	MAATTAKPQRTPQEVEDIIIRKIFHVSITGESTTTTGATDSRIVYLELTAAEILSEGKDLLLSRDVMERVLIDRLSGDFTVAGAESSPFNYLLGCYNRAHDESKKIVNMKDKNLRSEIETVIKQAKKLCVSYCRIHLANPELFSKNSSSSTGVGNSGAGASPLLPLIISECGGGGGMGVFGSGSSTAGVKSPPGFLDEFFRDSDFESLDRILKGLYEELRGSVMKVSVLGNFQDSLRVLLFLVRLPIGAKSLVSHEWWIPKGVYMNGRAIEMTSILGPFFHISALPDQTFFKSTPDIGQQCFSDASTRRPSDLLSSFTTIKTVMNTLYDGLSEVLRNLLRSTDTRENVLEYLAEVINLNASRAQIQVDPITCASSGMFVNLSAVMLRLCEPFLDANLTKRDKIDAKYVHHSNRLKLSGLTALHASSEEVTEWLDSKNPVKAGEMNQHNDGEKRLQQSQEASSSGSNIASTKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRSEDTLSTLKTMQEQSPSPQLALDITRLEKELELHSQEKLCYEAQILRDNTLIQNALSFYRLMIVWLVGLVGGFKMPLPHPCPMEFSTMPEHFVEDTLELLIFASRIPKALDGVVLDEFMNFIIMFMGSPDFIKNPYLRAKMVEVLNNWMPRSSGSSATSTLFEGHQLSLEYLVKNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWNVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWERRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVDRVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHVYVHLARGDTNSIFPSAISKDGRSYNDQLFSSAADVLRRIGEDGRIIQEFIQLGAKAKVAASEAMDAEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSQLTADMLIPDVELKAKIEEFIRSQEMKKHGESLNIQSSKATIQTTDTAEMLID*	1045

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal6g4591	1044	Pfam	Ubiquitin elongating factor core	276	928	IPR019474	GO:0000151\|GO:0006511\|GO:0016567\|GO:0034450
	Mal6g4591	1044	ProSiteProfiles	U-box domain profile.	944	1018	IPR003613	GO:0004842\|GO:0016567
	Mal6g4591	1044	SMART	Ubox_2	948	1011	IPR003613	GO:0004842\|GO:0016567
	Mal6g4591	1044	Coils	Coil	530	550	-	-
	Mal6g4591	1044	Pfam	U-box domain	945	1016	IPR003613	GO:0004842\|GO:0016567
	Mal6g4591	1044	SUPERFAMILY	RING/U-box	937	1017	-	-
	Mal6g4591	1044	CDD	RING-Ubox_UBE4A	947	1015	-	-
	Mal6g4591	1044	MobiDBLite	consensus disorder prediction	433	464	-	-
	Mal6g4591	1044	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	944	1023	IPR013083	-
	Mal6g4591	1044	PANTHER	-	5	1020	-	-
	Mal6g4591	1044	PANTHER	UBIQUITINATION FACTOR E4	5	1020	IPR045132	GO:0000151\|GO:0030433\|GO:0034450

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal6g4591	4	1044	U-box Gene Family	AT5G15400	75.190	0.0	1613

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal6g4591	K10597		-	gmx:100806175	1728.38

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal6g4591	6	129702714	129711458	Mal6g4591	6	129702714	129711458	ECH