LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal6g4513	ATGTCTTCTTCCTATAGAACAAAAGATTTTCAAGATATGGTGAAAAGTTCTACAAGAAGCTATGATGTGTTCTTAAGTTTCAGAGGAGTGGACACTCGTGAATCTTTCACTTCACATCTTTGCACTTGTATTCAAATATCCGGAATCGTCGTTTTTAGGGACGAAGATTCACTTAGAAAAGGAGATCTCATTTCAACTACTCTATTGCGAGCAATCGAAGAGTCTAGAATTGCTACTATCGTTTTCTCAAGAAATTATGCAGGATCGCGATGGTGTTTGGTAGAGTTGGAGAAAATAATGGAGTGTTCTAGAACAATTGGACTAGTTGTTTTGCCGGTGTTCTACGGTGTAGATCCGTCTGAAGTACGTCATCAAACTGGTGAATTTGGAAAAGCGTTTCAACTTTTTTTGGATAGAAATGGAATTACAAAGGAAGATGAGTTGAAATGGAGAGATGTGCTTCGTGAAGCTGCTGGCCTTGCTGGATTTGTGGTCCTAAAATTCAGGAATGAAAGTGAAGCAATCGACGATATAGTTGAAAATATTTCACGTTTGCTTGACAAGACAGATTTGTTTGTTGCTGATAATCCAGTGGGAGTCGAATCTCGAGTACAAGATATGATTCAACGGTTAAACATCCTACAAACAAATGAAAATATACTACTAGGGATTTGGGGCATGGGTGGCATTGGTAAAACCACCATCGCGAAAGCCATTTACAATAAAATTGGTCGCAAATTTGAAGGTAGGAGCTTCCTTGCAAATATCAAGGAAGTTTGGGAGCAAAATGATGGACCAATTCATTTACAAGAACAACTTCTTTTTGATATTTGCAAAGATACGAAAACTAAGATACGAAGCACTGAGTCAGGAAAAAGTATATTAATGGATAGAGTATGTCATAAAAGAGTTCTTATTGTACTTGATGATGTGAGTGAATTGGACCAATTGAATGCTTTGTGCGGAAATCGTGAATGGCTTAGTTCAGGGAGTAGAATAATTATCACAACCAGAGATATGCACATACTTAGAGGAAATAGAGTTGACCACGTGTGCACAATGAAAAAAATGGACGAAAGTGAATCAATTGAGCTTTTTAGTTGGCATGCATTCAAACAAGCGAGTCCTATAGAAGATTTTACTGGAATTTCAAGAAATGTAGTTGAGTATTCTGGGGGATTGCCGCTAGCTCTACAAGTCCTTGGTTCATATTTGTTTGATAGGAGGATAGCAGAGTGGAAGTGTGTATTGGAGAAACTCATACGAATTCCTAACGATCAAGTGCAGAAGAAGTTAAAAATAAGCTATGATGGTTTAAATGATGACACTCAGAAGAAAATATTCCTTGACATAGCTTGTTTCTTTATTGGGATGGATCGAAATGATGTTACACTTATATTAAATGGATGTGAACTTTTTGCAGAAATTGGAGTAAGTGTCCTTATTGAGAGAAGCCTTGTAACTGTTGATGATAGGAACAAGCTTGGAATGCATGATTTGCTGCGCGATATGGGAAGAGAAATCATTCGTGAAAAATCAGAAGAGCCTGAGGGGCGTAGCAGATTATGGTTTGATAAGGATGTGTTTGATGTATTATCAGAACAAAGCGGAACAAAAGTTGTTGAGGGATTAGCTTTGAAGTTACCAAGAGTAAATGCAAAATGTTTTAGTACTAAAGCATTTAAGAAGATGGAAAAACTCCGATTGCTTCAACTTACTGGTGTACAGCTTGATGGCGATTTCAAACATCTTTCAAGAAATTTGAGATGGCTTTCTTGGAATGGATTTCCTTTAACATGCATTCCTTCAAGCTTTTATCAAGGAAATTTAGTTTCAATTGAGTTAGAAAACAGCAATATCAAACTTGTCTGGAAAAAGACCCAGAGGTTGGAGAAGTTGAAAATTCTCAATCTTAGTCATTCTCATTATCTGACACAGACTCCAGATTTTTCAAACTTGCCTAATCTTGAACAACTAATACTCACCGATTGTCCAAAGTTGTCAGAGATTTCTCATAGCATTGAACATCTCAATAAAATTCTTCTGATAAATTTGGAAGATTGTATTGGTCTTCAGAGCCTTCCAAGAAGTATCTATAAGTTGAAATCTCTAAAAACTCTCATTCTTTCTGGATGTTCAATGATTGACAAGTTGGAAGAGGACATAGAACAAATGACATCTTTAACCACCCTGATAGCAAATAACACCGCAAGAACAAGAGTGCCCTTTTCAGTAGTAAGGTCGAAAAGCATTGGATATATTTCTTTGTGCGGCTATGAAGGATTTTCACGTGATGTGTTTCCATCTATCATTTGGTCTTGGATGTCACCAACAAATGATCTCACTTCCCCATTTCAAACATCTGATGCCATGTCATCCCTTGTTCCTTTAGATATACTAAATAGTAGTTCACATGAACTATCATCTATGTCCAACTACCTTCCATGGCTTCGATGCCTTTGGGTGGAATGCGGCTCAGAACTTCAACTTTCTCAAGATGCAGAAAGAATTTTGGATTCCTTGCATGCCACAAATTCTAAAGAATTGGAATCATATGCTACATCACAATTATCAAATGAGAAAACTCATGCATTACTTCAATATCGCAGTCAAGTGCACATTTCAGGATCAAAAACTTCATTGATATCTTTTCTTATTCAAATGGGGATGAATTGCCAAGTCACCACAATGTTGAAAGAGAACATATTACAGAATATGGATGTTAACGGACATGGTGGTTGTTTGCTCCCCGGTGATAGTTACCCAAATTGGTTTTCCTTTAATTACGAAGGTTGTTCGGTAAAATTTGAAGTCCCTCAAGTGGAAGGGAGTATATTGAAGACAATGATATGTGTTGTCTATTCTTCAACACCAAATAACGTAGTATCAGATGGGCTTAAAAATGTGATGGTGAAAAATTACACAAAAGCTACCATTCAACTATATAAGAGAGAGGCATTAGTCTCCTTAGAAGATGAGGAGGGGCATAGAGTAGTATCAAGTATAGAACCTGGTAACCAAGTGGAGATTGTTGTTGTTGTTGAGAACGATTTCATTGTGAAGAAGACAATAATTTATCTCATATATGATGAATCAATTGGCAAAACAATGGAGCAAAGTCATGCTACAGATAAAGATAACAGAAGGAAGAAAACTCTCAAGTGGTGCTGCTAG	3174	0.3689	MSSSYRTKDFQDMVKSSTRSYDVFLSFRGVDTRESFTSHLCTCIQISGIVVFRDEDSLRKGDLISTTLLRAIEESRIATIVFSRNYAGSRWCLVELEKIMECSRTIGLVVLPVFYGVDPSEVRHQTGEFGKAFQLFLDRNGITKEDELKWRDVLREAAGLAGFVVLKFRNESEAIDDIVENISRLLDKTDLFVADNPVGVESRVQDMIQRLNILQTNENILLGIWGMGGIGKTTIAKAIYNKIGRKFEGRSFLANIKEVWEQNDGPIHLQEQLLFDICKDTKTKIRSTESGKSILMDRVCHKRVLIVLDDVSELDQLNALCGNREWLSSGSRIIITTRDMHILRGNRVDHVCTMKKMDESESIELFSWHAFKQASPIEDFTGISRNVVEYSGGLPLALQVLGSYLFDRRIAEWKCVLEKLIRIPNDQVQKKLKISYDGLNDDTQKKIFLDIACFFIGMDRNDVTLILNGCELFAEIGVSVLIERSLVTVDDRNKLGMHDLLRDMGREIIREKSEEPEGRSRLWFDKDVFDVLSEQSGTKVVEGLALKLPRVNAKCFSTKAFKKMEKLRLLQLTGVQLDGDFKHLSRNLRWLSWNGFPLTCIPSSFYQGNLVSIELENSNIKLVWKKTQRLEKLKILNLSHSHYLTQTPDFSNLPNLEQLILTDCPKLSEISHSIEHLNKILLINLEDCIGLQSLPRSIYKLKSLKTLILSGCSMIDKLEEDIEQMTSLTTLIANNTARTRVPFSVVRSKSIGYISLCGYEGFSRDVFPSIIWSWMSPTNDLTSPFQTSDAMSSLVPLDILNSSSHELSSMSNYLPWLRCLWVECGSELQLSQDAERILDSLHATNSKELESYATSQLSNEKTHALLQYRSQVHISGSKTSLISFLIQMGMNCQVTTMLKENILQNMDVNGHGGCLLPGDSYPNWFSFNYEGCSVKFEVPQVEGSILKTMICVVYSSTPNNVVSDGLKNVMVKNYTKATIQLYKREALVSLEDEEGHRVVSSIEPGNQVEIVVVVENDFIVKKTIIYLIYDESIGKTMEQSHATDKDNRRKKTLKWCC*	1058

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal6g4513	1057	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	29	1029	IPR044974	GO:0006952
	Mal6g4513	1057	Gene3D	-	18	184	IPR035897	-
	Mal6g4513	1057	Gene3D	Ribonuclease Inhibitor	541	828	IPR032675	-
	Mal6g4513	1057	PRINTS	Disease resistance protein signature	298	312	-	-
	Mal6g4513	1057	PRINTS	Disease resistance protein signature	391	405	-	-
	Mal6g4513	1057	PRINTS	Disease resistance protein signature	699	715	-	-
	Mal6g4513	1057	PRINTS	Disease resistance protein signature	221	236	-	-
	Mal6g4513	1057	Pfam	NB-ARC domain	201	433	IPR002182	GO:0043531
	Mal6g4513	1057	SUPERFAMILY	Toll/Interleukin receptor TIR domain	16	162	IPR035897	-
	Mal6g4513	1057	Gene3D	-	356	440	IPR042197	-
	Mal6g4513	1057	SMART	AAA_5	218	358	IPR003593	-
	Mal6g4513	1057	Pfam	TIR domain	21	187	IPR000157	GO:0007165
	Mal6g4513	1057	PANTHER	RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED	29	1029	-	-
	Mal6g4513	1057	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	188	451	IPR027417	-
	Mal6g4513	1057	Gene3D	-	185	351	IPR027417	-
	Mal6g4513	1057	SUPERFAMILY	L domain-like	545	836	-	-
	Mal6g4513	1057	SMART	till_3	20	160	IPR000157	GO:0007165
	Mal6g4513	1057	ProSiteProfiles	TIR domain profile.	19	186	IPR000157	GO:0007165
	Mal6g4513	1057	SUPERFAMILY	"Winged helix" DNA-binding domain	427	532	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal6g4513	Mal-Chr6	128569474	128574797	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal6g4513	16	720	WRKY Transcription Factor Family	AT4G12020	31.215	3.37e-82	292

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal6g4513	-		-	cam:101494533	1516.13