LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal6g4506	ATGGCAGATCAACTAAGTAGAGTATTTCTTCGAGCTGCGTCTGAGATGATTATAGCAGGCACAAAGACTCAAGAGTTTAATTCCACGGTTGAAAAGAACTTAAAAAATTTGGTTCCTTTGATTGAAGAGATCAAACATTACAATGATTTGTCGGATCGACCAAAAGAAGAAACAGAGAGGTTAGAGTATCACATAAGAGATGTTCAACAGCTTGTACGAAAAAGCACCAAACTTAATCCATGGAACTTTCTTTCTAATCGAAATTATCAAACCAAGTTTCAGAAGAAGGAGGATGCACTTAAGAAAGTTGTAGATGATATGAGGAAAAACAATATGAGGAAAGGATTATTAAGGAGCTATGACGTGTTCTTAAGTTTTCGAGGGGAAGACACGCGTGCTTCATTCATTTCACATCTATATGCTTCTCTTCAAAATGCTGGAATTATTGTTTTTAGGGACGATGATTCGCTTCTTATAGGAGATCACATTTCAACATCACTACTCCAAGCAATCCAAGAGTCTAGAATTTCCATTATTGTTTTCTCAAAGAACTATGCGGATTCGCGATGGTGTTTGGATGAGTTGGTGAAAATAATGGAGTGTCGTAGAACCATAGGACAAATAGTGCTACCTGTGTTCTACGATGTTGATCCCTCTGAGGTACGCCACCAAATTGGTGAGTTTGGAAAAGCGTTTCAAAGACTCTTGAACAGAATTTCGAATAAGAAAGACGCTTCCCTGAAATGGAGAGATGTGCTTCGTGAGGTTGCTGGCCTTGCTGGCGCCGTAGTTCTAAATTCCAGGAATGAAAGTGATGCAATCAAGGATATTGTTGAAAATGCATCAAATTTTCTTGACAAAACAGACTTGTTCATTGCTCATAATCAAGTGGGAGTCGAATCTCGAGTGCAAGATGTGATTCAATACCTAGACCTCGAACGATCAAATGATGTTCTACTACTAGGGATGTGGGGTATGGGAGGTATTGGTAAAACTACCTTGGCCAAAGCTATTTACAACAAAATTGGTCGCAATTTTGAAGGTAGGAGTTTCCTTGCAAATATTAGGGAAGTTTGGGAGAAACCTACTGGACAAGTGGATTTACAAGGGCAACTTCTATCTGATACCTTGAAAGGAATGGCGACCAAGATACACAATATTGATTCAGGTAAATGTACACTAAAGGATAGACTTTGTCATAAGAGAGTACTTATTATACTTGATGATGTGGATGATTTGGAGCAGCTGGATGCTTTGTGTGGAAGTCGTAATTGGTTTGGTTCAGGGAGTAGAATAATTATCACGACAAGAAACATGGACATACTTAGAGGGAATAGAGTTGACAAAGTATACTCAAATAAAGAAATGGATGAAACTGAATCAGTTGAGCTATTTAATTGGCATGCATTCAAGCAAGCGAATCCTAGAGAGGAATTTGTTGAAATTTCCAAAAATGTCGTTATGTATTCCAGGGGATTGCCGCTAGCTCTAGAAGTTCTTGGGCGATATTTGTTTGAGAGGGAGGTAGCAGAATGGAATTCTGTATTGGAGAAACTAAAAAGAATTCCCAATGACAAAGTACAGAAGAAGTTAAAAATAAGCTATGATGGTTTAGACGATGATTACCAGAAAGCAATATTCCTTGACATAGCTTGTTTCTTTATTGGGATGGACCGGAGTGATGTTATACATATATTAAATGGTTGCGGATATTTTGCAGAAGAAGGAATAAGAGTCCTTGTTGAGCGAAGTTTGGTAACTATTGATTATAAAAACAAGCTTGGAATGCATGATTTGTTGCGGGATATGGGGAGAGAAATCATTTGTGATAAACCACGAAAAGAGCCAGAGGAGCATAGCAGGTTGTGGTTTCATGAGGATGTTGATGGTGTATTAGCAGGACAAGCTGCAACAAAAGCTGTTGAGGGACTGTCTTTGAAGTTTCCAAGAGAAAGCACAAAATGTTATAGTACTAAAGCATTTAAGAAGATGAAGAAACTGAGATTGCTTCAACTCGCTGGTGTACAACTTGATGGCGATTTTGAATATCTTTCAAGAAAATTAAGATGGCTTTCTTGGAATAGATTTCCTTTATCATGCATACCTACAAACTTCTATCAAGGAAATTTAGTTTCGATCGAGTTAGAAAACAGCAACATCAAAGTTGTGTGGAAAGAGACTCAGGTATTGATTTTGATTTTAGTTTTTTGCATGTAA	2217	0.3775	MADQLSRVFLRAASEMIIAGTKTQEFNSTVEKNLKNLVPLIEEIKHYNDLSDRPKEETERLEYHIRDVQQLVRKSTKLNPWNFLSNRNYQTKFQKKEDALKKVVDDMRKNNMRKGLLRSYDVFLSFRGEDTRASFISHLYASLQNAGIIVFRDDDSLLIGDHISTSLLQAIQESRISIIVFSKNYADSRWCLDELVKIMECRRTIGQIVLPVFYDVDPSEVRHQIGEFGKAFQRLLNRISNKKDASLKWRDVLREVAGLAGAVVLNSRNESDAIKDIVENASNFLDKTDLFIAHNQVGVESRVQDVIQYLDLERSNDVLLLGMWGMGGIGKTTLAKAIYNKIGRNFEGRSFLANIREVWEKPTGQVDLQGQLLSDTLKGMATKIHNIDSGKCTLKDRLCHKRVLIILDDVDDLEQLDALCGSRNWFGSGSRIIITTRNMDILRGNRVDKVYSNKEMDETESVELFNWHAFKQANPREEFVEISKNVVMYSRGLPLALEVLGRYLFEREVAEWNSVLEKLKRIPNDKVQKKLKISYDGLDDDYQKAIFLDIACFFIGMDRSDVIHILNGCGYFAEEGIRVLVERSLVTIDYKNKLGMHDLLRDMGREIICDKPRKEPEEHSRLWFHEDVDGVLAGQAATKAVEGLSLKFPRESTKCYSTKAFKKMKKLRLLQLAGVQLDGDFEYLSRKLRWLSWNRFPLSCIPTNFYQGNLVSIELENSNIKVVWKETQVLILILVFCM*	739

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal6g4506	738	CDD	AAA	297	442	-	-
	Mal6g4506	738	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	125	721	IPR044974	GO:0006952
	Mal6g4506	738	Gene3D	-	283	450	IPR027417	-
	Mal6g4506	738	Gene3D	-	117	282	IPR035897	-
	Mal6g4506	738	PANTHER	RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED	125	721	-	-
	Mal6g4506	738	Pfam	TIR domain	120	283	IPR000157	GO:0007165
	Mal6g4506	738	Gene3D	Ribonuclease Inhibitor	638	730	IPR032675	-
	Mal6g4506	738	SUPERFAMILY	"Winged helix" DNA-binding domain	525	631	IPR036390	-
	Mal6g4506	738	SMART	till_3	119	259	IPR000157	GO:0007165
	Mal6g4506	738	SUPERFAMILY	Toll/Interleukin receptor TIR domain	119	261	IPR035897	-
	Mal6g4506	738	Gene3D	-	455	539	IPR042197	-
	Mal6g4506	738	Pfam	Arabidopsis broad-spectrum mildew resistance protein RPW8	21	105	IPR008808	-
	Mal6g4506	738	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	288	550	IPR027417	-
	Mal6g4506	738	Pfam	NB-ARC domain	300	536	IPR002182	GO:0043531
	Mal6g4506	738	ProSiteProfiles	TIR domain profile.	118	285	IPR000157	GO:0007165
	Mal6g4506	738	PRINTS	Disease resistance protein signature	397	411	-	-
	Mal6g4506	738	PRINTS	Disease resistance protein signature	662	678	-	-
	Mal6g4506	738	PRINTS	Disease resistance protein signature	320	335	-	-
	Mal6g4506	738	PRINTS	Disease resistance protein signature	490	504	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal6g4506	Mal-Chr6	128385992	128389213	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal6g4506	118	725	WRKY Transcription Factor Family	AT4G12020	32.905	7.75e-80	277

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal6g4506	-		-	cam:101512894	982.245