Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g4289 ATGGGTCGTGGAAGAATATCTATGGAACTCATTCAAAAGGAGAAATCAAGAAAGACAACCTTTCAAAAGAGAAAGAATGGATTAATGAAAAAGGTGAATGAATTTTCCATTCTTTGTGATGTTGATGTTTGTGTAGTTCTCTATGCTCCCAATTTTGAAGGTCAAGGATTTGCTGAACCTGAAACATGGCCTAAAGACCAGAGAGAGGTACAAAGAATTCTTCAAAAATACTATAACACAACAGTTGATAAGCGCCATAAGATCTATGATGTTCAAGAGTATTTTAAGGAAAGGATGAAAAAAATCGAATTTGAGATTTCCAAACTGCGCAAAGAGAGGTTAAAAATGGTGTATCCAACTTGGGATGAATCTTATAATTCTCTTGGAGCTGAACAAGTGAGTTTATTTGTTAGCATGTTGGATTCTAAGCTTGATGCTTGTAATCAAAAGATGCATATGCTAAAAGAAGATCCTAAGGGAAAAACAATAGCTCATGAATCACACAAGGTAGATAAACTTATTACTACTCCTTACTTGGCCTCAAATCCAAGTAGCTACTTCAATTTTATGGAAAACAACATGTCTCAAGCACAAACAAGTAGCTACTTCAATCTTATGCAAAACAACATGTCTCAATCACAAACTTATCCTCCATTGATGAATATTAGTGATAAAAACCCCTTAGGGTTTTTGCCACTTCAACTAGGACAAAGCTCTCAACCTTCATCTATGATTTCAAGTGCACAAAGCTCATACCATGTGGAGTCTGAGGTGGGTAGATATGCACAATCTTACCCTTGTAAGCATATTGATATTAATTGGGCTAATTGGGCCAATCAAGTTAATGCTAATGTTACCTATGATTCCAAAATTGATATGAAAAGGAAGGATGGAGCAGAAAATGATGAAAACTTGTCACCATACTATTACAATGTCAATGCAATGTCAATGCAATCATATGCTACTCCTATGCATAGTCTTCCTTTCCAGAATCTTTCAAACCTACCACATGGATTTCAACTTAAGGGATTCAATGATATGGGTATTCTTCAACCTCATATGTTCAACTATATGGATGGAAGGAAGTAG 1089 0.3545 MGRGRISMELIQKEKSRKTTFQKRKNGLMKKVNEFSILCDVDVCVVLYAPNFEGQGFAEPETWPKDQREVQRILQKYYNTTVDKRHKIYDVQEYFKERMKKIEFEISKLRKERLKMVYPTWDESYNSLGAEQVSLFVSMLDSKLDACNQKMHMLKEDPKGKTIAHESHKVDKLITTPYLASNPSSYFNFMENNMSQAQTSSYFNLMQNNMSQSQTYPPLMNISDKNPLGFLPLQLGQSSQPSSMISSAQSSYHVESEVGRYAQSYPCKHIDINWANWANQVNANVTYDSKIDMKRKDGAENDENLSPYYYNVNAMSMQSYATPMHSLPFQNLSNLPHGFQLKGFNDMGILQPHMFNYMDGRK* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g4289 362 CDD MADS_SRF_like 2 77 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal6g4289 362 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Mal6g4289 362 PANTHER MADS BOX PROTEIN 3 233 - -
Mal6g4289 362 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal6g4289 362 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 3 233 - -
Mal6g4289 362 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal6g4289 362 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal6g4289 362 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal6g4289 362 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal6g4289 362 SUPERFAMILY SRF-like 2 98 IPR036879 GO:0003677|GO:0046983
Mal6g4289 362 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g4289 Mal-Chr6 123196661 123197749 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g4289 1 123 Type I MADS-box Gene Family AT5G55690 43.548 9.54e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal6g4289 SRF-TF 6.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g4289 - - mtr:MTR_1g114730 499.975