Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g4179 ATGGCTCATCTCTCACCTGAAACCCTAGCAAAGATAAAAGCATACCGCCTTTCTCCAACCGCATTCCCGACTGAAATTGATGCGGATTTTATGCTTCAATTTCTCGAAAAATATCGTGATCTCGGCGATGGCAGCGTACCACCGGAGAACCATATCAACCAAGACTTGAATCCTAGAATTGCTCAACTCCAACAAGTCCAATTCAGACAGCGGACAATGCTCCTTTCACATATTAATAATGATTTGCGTCTTAATGGTTATATACAACAACAATCACAACCAAGCCTTATCCCTCTAAGTGGGGTCGGCCTTAATGGTTATATGGTTGAACAAAATTATGGAAAAAAAAGAAAGAATGCAGTTGAAGTAACTGGTTCACCAAATGCACCTGTTTCGCTACCTGATACTACAAACAAATGTTTGGATGCCCTGCGTGGTCCGGATGGTCAACTTCCTGAGAAGTTGAGGAACTTAACACCTCGCCACATTGAATATGTCAGTAATGAGATTATGGATAAAGATCCCAATGTCCATTGGGATGACATTGCTGGATTGGACCATGCCAAAAAATGTGTTAATGAGATGGTCGTATTACCTCTACGACGTCCTGACTTATTTATGGGCTGCCGTTCTCCTGGGAAAGGTCTGCTTCTATTTGGTCCACCAGGAACTGGTAAAACAATGATTGGAAAAGCTATAGCTGGGGAGGCAAAGGCAACCTTCTTTTACATATCTGCAAGCTCGTTGACTAGCAAATGGATTGGTGAAGGTGAAAAGTTAGTAAGAGCCCTCTTTGGAGTGGCCAGTTGTCGTCAGCCAGCAGTCATATTTGTCGATGAAATAGATTCACTCTTGTCTGAGCGTAAAGGTAATGAGCATGAAGTAACTAGACGTTTAAAGACACAATTTCTTATGGAAATGGAAAGCTTTGCCGGTGGTAACGAGCAAGTCTTGGTTATCGGTGCAACAAATCGTCCCCAAGATCTTGATGAAGCAGCACGAAGGAGACTTTCTAAACGACTATACATTCCTCTACCACCCTCAGAGGCAAGAGCTTGCATTGTACGCAACCTTTTAGAAAAGGATGGATTATTCAAGCTATCAAATGAGGAAATGGAGATTGTATGCGACTTAACGGAAGGTTATTCAGGATCAGACATGAAAAACTTAGTGAAGGATGCTTCTATGGGTCCATTGAGAGAGGCAATGGGACAAGGTGCAGATATTATGGATTTGAAAAAGGAGGATATGAGGCCAATAACTCTTCAGGACTTCAAGAATTCCCTGCAAGAGATAAGGCCTTTTGTTTCACCTAATGAACTTGGCACTTATGAGCAATTTAATAAGCAATTTGGAAGCTTATCAATTTAG 1371 0.4179 MAHLSPETLAKIKAYRLSPTAFPTEIDADFMLQFLEKYRDLGDGSVPPENHINQDLNPRIAQLQQVQFRQRTMLLSHINNDLRLNGYIQQQSQPSLIPLSGVGLNGYMVEQNYGKKRKNAVEVTGSPNAPVSLPDTTNKCLDALRGPDGQLPEKLRNLTPRHIEYVSNEIMDKDPNVHWDDIAGLDHAKKCVNEMVVLPLRRPDLFMGCRSPGKGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSERKGNEHEVTRRLKTQFLMEMESFAGGNEQVLVIGATNRPQDLDEAARRRLSKRLYIPLPPSEARACIVRNLLEKDGLFKLSNEEMEIVCDLTEGYSGSDMKNLVKDASMGPLREAMGQGADIMDLKKEDMRPITLQDFKNSLQEIRPFVSPNELGTYEQFNKQFGSLSI* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g4179 456 SMART AAA_5 212 347 IPR003593 -
Mal6g4179 456 PANTHER FIDGETIN-LIKE PROTEIN 1 113 453 - -
Mal6g4179 456 CDD AAA 209 345 - -
Mal6g4179 456 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 451 IPR027417 -
Mal6g4179 456 Pfam Vps4 C terminal oligomerisation domain 417 452 IPR015415 -
Mal6g4179 456 Pfam ATPase family associated with various cellular activities (AAA) 216 345 IPR003959 GO:0005524|GO:0016887
Mal6g4179 456 ProSitePatterns AAA-protein family signature. 317 336 IPR003960 GO:0005524|GO:0016887
Mal6g4179 456 Gene3D - 175 448 IPR027417 -
Mal6g4179 456 Gene3D - 346 432 - -
Mal6g4179 456 PANTHER AAA DOMAIN-CONTAINING 113 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g4179 Mal-Chr6 120437777 120441220 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g4179 169 454 Calmodulin-binding Proteins AT3G56690 33.447 4.15e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g4179 K22766 - gmx:100789161 549.28