Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g4172 ATGACTGGAATTTCTGATGAAAGGGAGTATATTAGAGATGGAAAAATTACTAAAATGATTGTTGTTGAATTAACTGATGGGAGTGGCAAATGTGAGTGTGCTTTGTTTGGGGACTATGTTGATGATTTGAAGAAGATGATGGGTAAAGCTGCTGATGGGAAGCTTATTGTTGTTGTGCAATTTGCAAAGATAAAGATATTCAGGGATAAAGCTTCTATTCAAAATGTTATTAGTACAACAAAGGTTTATGTTAATCCTGACTTTCCAGAAGCTTTGAAGTTCAAAGAGAGTTTGGCTGCTGTTGCTGTTGCTGATGATGGCAATATATCTATTCCTTTGATTGGAAGTAGTGTTAAGCCAAATTTGGAGAGTGATTTTTTGACTATGGAAACTGGAAAGACTCTTCATGAGTTGGAGAACTTTGCTGAGGATGGAATTTATGTGGTGTATGCTAGAATTGATGGTGTTGTTCCTGGTGAAGATTGGTGGTATCCTGCTTGCAAATGTCATAGGAGTGTAACGCTTGATTCTGGTGCATATTTTTGCAAGGGTTGTGCGAAGCATGTTTTTAACATGATTCCTAGGTTTAAGCTGAAGTTGGAAGTTTCGGATGGAACTGACTCAGGAGTTTTTGTTCTATTTGATACTGATGTCCAATTTTTGTTGGGGAAGCAGTGTGTTGCATTGATTAATGATTTAAAGCCTGACGATGTTGATCAAAAGCCAAGTTGTTTTGATGAGTTGAATGGCAAGAAGTTGTTGTTTAAGGTTGAGAAGTGTACTGTTGTGAACCCTATCTTTGATGGCTCTTATAAAGTTAAGAGGGTTTGTACTGATCCAAATATTATTGAAAAATTTGTGAAGTCTTATTATGATGAAGACATTGAATTTTTATCTGATCTTATAGTTACTCCAGGCCTTGATGACTTAGCAAATCTTTCGACTCTTGCTGAAAATGTTTGTACTGAAGTAGAAGGGGGTGTCAATTTAAAGAGGAATTTGGGTGAGGAGTTAGAAAATGTTGGCAAAGTTGGTTCAAGGAAGAGGTTGAGGAAAGTGAAGATAGAAAAAGATTGA 1077 0.3649 MTGISDEREYIRDGKITKMIVVELTDGSGKCECALFGDYVDDLKKMMGKAADGKLIVVVQFAKIKIFRDKASIQNVISTTKVYVNPDFPEALKFKESLAAVAVADDGNISIPLIGSSVKPNLESDFLTMETGKTLHELENFAEDGIYVVYARIDGVVPGEDWWYPACKCHRSVTLDSGAYFCKGCAKHVFNMIPRFKLKLEVSDGTDSGVFVLFDTDVQFLLGKQCVALINDLKPDDVDQKPSCFDELNGKKLLFKVEKCTVVNPIFDGSYKVKRVCTDPNIIEKFVKSYYDEDIEFLSDLIVTPGLDDLANLSTLAENVCTEVEGGVNLKRNLGEELENVGKVGSRKRLRKVKIEKD* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g4172 358 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 2 227 - -
Mal6g4172 358 Gene3D - 1 103 IPR012340 -
Mal6g4172 358 CDD RPA1_DBD_C 133 264 IPR013955 -
Mal6g4172 358 SUPERFAMILY Nucleic acid-binding proteins 2 99 IPR012340 -
Mal6g4172 358 Gene3D - 121 277 IPR012340 -
Mal6g4172 358 CDD RPA1_DBD_B_like 1 98 - -
Mal6g4172 358 Pfam Replication factor-A C terminal domain 158 258 IPR013955 -
Mal6g4172 358 SUPERFAMILY Nucleic acid-binding proteins 142 264 IPR012340 -
Mal6g4172 358 PANTHER REPLICATION FACTOR A 1, RFA1 2 227 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g4172 Mal-Chr6 120175920 120177548 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g4172 34 257 Core DNA Replication Machinery Family AT5G08020 25.424 5.69e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g4172 - - mtr:MTR_8g062030 321.627