Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g4170 ATGTTTGGGAGGATTCTAAGTTTAGCATCACTTAATCCTATTGCCTCAGGTTATCATATTAAGGTTAGGGTAATAAGAAGATGGGACATGCATAGCCAGTTTGTGGATGGAAGGGTTCATTCTACTGAGTTGATTGTGTTGGATCGAGATGGTTTTAAAATTCAAGTTACGATACCTTCTTATTGTAGTGGGAAATTTAAGAATTTGATAAGGGAAGGAATGGTGTATAAGATGACTAAATTTCATGTTTTACCAAATGATGGTGACTTCATGCTAACCTACAATGGATACAAGATCATATTTCATGCTAGGACCCGCGTTGAAAATGAGGAGACTTATCTCATTAGTCCACATGGTTTATCTTTTATGAAAGCTAAAGACATCCTTGAGAATAAGAAAGGATGTCGTTATTCTGTTGATGTTATTGGGGTTTTGACTGGAATAGACTTTGATTCTTATTATAAGCGTATGTTGCTCAATGATAAGGAGGTTTCATTTTATTTATCTGATCATAGTGGGAAGTTTCGTTGTGTGTTGCATGGATCTTTGGTTGATCAGTTTAAGGAGGGTGTAATGAATACGTCCAATGGGTTGCCTGTAGTGATAATGCAGTTTGCCAAAGTTGAGATTCAAAAAGGGATTTTTATTAATCCTCCTATTGCAGAATACTTCCTCTTTAAAACTGGGTTGGAGCTACCGTTTGATGGAAACCATCTTCAACTTGATACTCCCATTGTTAGGAAACCATATTTCATTCCTTTGGATTTTCTTAAATCCTATCCTAAGAAAACACTAAATGAATTGGTTCACTGTGCTGAGGATGGATTATTTGTTGTCCAAGCTAAAATTTCCCGTATTTATCAGAAGGATCAGTGGTGGTATCCTGTGTGTCAATGCAGAAATGTTATTAATCGTTTGTTTGGTCCTCACTTTTCTATGATTGCCGTCAAAAAGGGTTCAAGATTCTTTCTAAGTTTAAGTTGA 984 0.3598 MFGRILSLASLNPIASGYHIKVRVIRRWDMHSQFVDGRVHSTELIVLDRDGFKIQVTIPSYCSGKFKNLIREGMVYKMTKFHVLPNDGDFMLTYNGYKIIFHARTRVENEETYLISPHGLSFMKAKDILENKKGCRYSVDVIGVLTGIDFDSYYKRMLLNDKEVSFYLSDHSGKFRCVLHGSLVDQFKEGVMNTSNGLPVVIMQFAKVEIQKGIFINPPIAEYFLFKTGLELPFDGNHLQLDTPIVRKPYFIPLDFLKSYPKKTLNELVHCAEDGLFVVQAKISRIYQKDQWWYPVCQCRNVINRLFGPHFSMIAVKKGSRFFLSLS* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g4170 327 SUPERFAMILY Nucleic acid-binding proteins 6 109 IPR012340 -
Mal6g4170 327 Gene3D - 4 111 IPR012340 -
Mal6g4170 327 PANTHER REPLICATION FACTOR A 1, RFA1 7 213 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal6g4170 327 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 7 213 - -
Mal6g4170 327 Gene3D - 115 231 IPR012340 -
Mal6g4170 327 CDD RPA1_DBD_A_like 20 107 - -
Mal6g4170 327 Pfam Domain of unknown function DUF223 43 131 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g4170 Mal-Chr6 120158801 120160346 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g4170 4 208 Core DNA Replication Machinery Family AT5G45400 25.581 1.87e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g4170 - - mtr:MTR_8g062060 194.897