Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g4137 ATGGAAAAGTCAATTGATTCAGTTTGTGATATTGACATTGTGTCTGGAAGGGAAGCATGGAGGATTAAGGTAAGGGTTGTTCGTATTTGGCAGGTTCCAACCTTTCTGAAGCATGATCAAACAAACTCTCTGGAAATGGTTCTAATTGATGAAAATGGTTGCAAGATTCAAGCTACTGTGAGGAAACAATTATTGTACCTTTTTCAACAGAAATTGATTGAAGGGGAAGTTTATAAGATGGCTTATTTTTCGGTTGTTCCAAACATTGGTTCTTACCGTACCACTCCTCATCCATACAAGCTTATTTTCCAAATGAAGACAAGGGTTCAAAGCTGTGAAGGTCCACAGATTCCATTGTATGGGCTTTCATTCACTAATATTAATGATGTATGCTGCCATACCGTGGATTATGACTATTTAGTCGATGTGATAGGCGTAATGACTGGTATATATGAAGAAGGGGAGTTCATTAGGAATGGAAAAATTACTAAGATTGTTGTTCTTGAACTGACTGACCCCAGCGGAAAGGTTGAATGTGCTTTGTTTGGGGAGTATGTTGGATTGTTGCAAAAATTGATGGGTAAAGGTAACGAAGGAATGCCCGTTGTTGTTGTTCAATTTGCAAAGATTAAAATATTCAAAGATAAGGCATCTGTGCAAAATGTGATGAATGCAACAAGGTTGTTGATCAATCCTGACATTGCAGAGGCTATTCAATTGAAGAATGGTGTAGGCCTCCTTGGAATTGAGACATCTACCACTGTTCCCATACTTGGTCGACGTGTAAGGCCATCTTTTGATGACGAATTTTTGCGACTGTATGCAATGAAAACTATTGCTATTGCTCAGCTTGCTGATCTGCCTGATGATCGAACTTTTATTGTAAGTGCAATTGTTGATGGACTGGTTGAAGGAGAGGAATGGTGGTACCCAGCCTGTAAGTGTCATAGGAAAGTAACTCCCGACTCTAATGCATTTTATTGCAAGGGTTGTGTTAAGCCTGTGTTCCATATGGTCCCCAGATATAAGGTGAAGGTCAGGGTTAGCGTTGGTACTGGTAATGCTGTTTTTGTGCTATTTGACAATGATGTATACTACTTACTTGGGAAGCAATGTTCTGTTTTGGTGTCTGCTGCAAATGCTAAAAATGTTGGGTTTTATCCTCCTGAGTTGATTTTACTCAACGGTAAGAGAATTCTCTTTAAGGTGGAGAAGCAGAAGACATTTGCTCTCGATGGTTCCTACAGAGTCAAGCGCGTATGTAATGATCAGTCTATAATTGCAAGTTTTTCCATTGATGATACCAGTTATACACCTACAAAGATTCTGACTGTGTTGAAAATTCCCAGCCAAACCCTTTCCCTGGTGTTAATTTTGCGTTCTGATGAGGTTGGAAAAGAATCTGTTTTTAAAAAGAAAATAGGCAGTCTCAAGCGTAAGTTGACTGATGATTTTGATGGTCTTGATGACATTGATTTTGAAGAAACTGTGAAGGCAGTTAACGTTGAAAAGGAGTAA 1518 0.39 MEKSIDSVCDIDIVSGREAWRIKVRVVRIWQVPTFLKHDQTNSLEMVLIDENGCKIQATVRKQLLYLFQQKLIEGEVYKMAYFSVVPNIGSYRTTPHPYKLIFQMKTRVQSCEGPQIPLYGLSFTNINDVCCHTVDYDYLVDVIGVMTGIYEEGEFIRNGKITKIVVLELTDPSGKVECALFGEYVGLLQKLMGKGNEGMPVVVVQFAKIKIFKDKASVQNVMNATRLLINPDIAEAIQLKNGVGLLGIETSTTVPILGRRVRPSFDDEFLRLYAMKTIAIAQLADLPDDRTFIVSAIVDGLVEGEEWWYPACKCHRKVTPDSNAFYCKGCVKPVFHMVPRYKVKVRVSVGTGNAVFVLFDNDVYYLLGKQCSVLVSAANAKNVGFYPPELILLNGKRILFKVEKQKTFALDGSYRVKRVCNDQSIIASFSIDDTSYTPTKILTVLKIPSQTLSLVLILRSDEVGKESVFKKKIGSLKRKLTDDFDGLDDIDFEETVKAVNVEKE* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g4137 505 Gene3D - 10 114 IPR012340 -
Mal6g4137 505 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 15 376 - -
Mal6g4137 505 SUPERFAMILY Nucleic acid-binding proteins 284 416 IPR012340 -
Mal6g4137 505 Pfam Domain of unknown function DUF223 45 140 IPR003871 -
Mal6g4137 505 CDD RPA1_DBD_C 293 420 IPR013955 -
Mal6g4137 505 Pfam Replication factor-A C terminal domain 293 403 IPR013955 -
Mal6g4137 505 SUPERFAMILY Nucleic acid-binding proteins 122 243 IPR012340 -
Mal6g4137 505 Gene3D - 272 426 IPR012340 -
Mal6g4137 505 Gene3D - 116 245 IPR012340 -
Mal6g4137 505 PANTHER REPLICATION FACTOR A 1, RFA1 15 376 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal6g4137 505 CDD RPA1_DBD_B_like 142 236 - -
Mal6g4137 505 SUPERFAMILY Nucleic acid-binding proteins 7 114 IPR012340 -
Mal6g4137 505 CDD RPA1_DBD_A_like 21 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g4137 Mal-Chr6 118389264 118391688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g4137 19 369 Core DNA Replication Machinery Family AT5G08020 23.784 1.53e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g4137 - - mtr:MTR_8g062030 554.673