Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g4092 ATGGGTTCACTAAACTTGAACAATGATGGTTATGGTTTCTCTTTGGACTTGAATATTTCCCTTTCATCTCAACTTCCATCTTCATCTTCTACTCCACTTTTGGGTCATGTTGGTAACAAAGAGTCTGAAAAGTCCAAAATACCCTATGAGGTTTTGAACCCTTTAGTGATCCATCCTAATGAGAGCATGGTCAAAAACAATGAAGGGGATTTTGTGGATGAGAAAAAAAACGTGTTGAACACTAGAGGTCATTGGAGACCATTTGAAGATGCTAAGCTTAAAAAGCTTGTTGATGAACTTGGTCCTCACAATTGGAACAACATTGCTGAACATATACATGGAAGATCAGGGAAAAGTTGCAGATTAAGATGGGTTAATCAACTAGATCCTAAAATTAACAAGGCACCTTTTAGTGATGAAGAAGAAGAAAAGCTTGTGTATGCTCATAAACTTTATGGTACAAAATGGGCACTCATTTGCAAACTCTTTCCGGGAAGGACAGATAATGCACTAAAGAATCATTTTCATGTGATCATGGCTAAGAAGCAAAGGGAATTATCATCTAGAAAGAGAAAGCAAACATTTCAAATCTCCACAAAGAATAATGTAGCTAGTGAATCAACCATTACAAGCAACATTGATGAGTCTAACTCAACTTGCACTAATCTCAACCTCACTACTAGGCCATTACTTAATTACCAAGCCTATAGTTCACAATTGGGTTTACTTGGAGAAGGAAAGGTAGAAGCAAGGGATTTTGATGTTGCCAAGATTTGCATTGCTATGAAAGGTTCATGTGTAGGTCAAATGGGAAATTATAAGAGTGTGGACCAATCCAATCTTTCAGATTTAAATTCAGAAGTTTCAGCATCTGAGTCAGTTGCAACAAACAAAAACAATGAATCAATTTTGGAGGAAAGTGAAATTGTGAGAGATAAGATTAAGGTGTCATTTATTGACTTTCTTGGAGTAGGTGATACATAG 984 0.3638 MGSLNLNNDGYGFSLDLNISLSSQLPSSSSTPLLGHVGNKESEKSKIPYEVLNPLVIHPNESMVKNNEGDFVDEKKNVLNTRGHWRPFEDAKLKKLVDELGPHNWNNIAEHIHGRSGKSCRLRWVNQLDPKINKAPFSDEEEEKLVYAHKLYGTKWALICKLFPGRTDNALKNHFHVIMAKKQRELSSRKRKQTFQISTKNNVASESTITSNIDESNSTCTNLNLTTRPLLNYQAYSSQLGLLGEGKVEARDFDVAKICIAMKGSCVGQMGNYKSVDQSNLSDLNSEVSASESVATNKNNESILEESEIVRDKIKVSFIDFLGVGDT* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g4092 327 PANTHER OS08G0435700 PROTEIN 64 327 - -
Mal6g4092 327 SMART sant 81 130 IPR001005 -
Mal6g4092 327 SMART sant 133 181 IPR001005 -
Mal6g4092 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 128 IPR017930 -
Mal6g4092 327 CDD SANT 85 126 IPR001005 -
Mal6g4092 327 ProSiteProfiles Myb-like domain profile. 129 179 IPR001005 -
Mal6g4092 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 183 IPR017930 -
Mal6g4092 327 Gene3D - 82 133 - -
Mal6g4092 327 SUPERFAMILY Homeodomain-like 82 175 IPR009057 -
Mal6g4092 327 Gene3D - 135 208 - -
Mal6g4092 327 Pfam Myb-like DNA-binding domain 85 145 - -
Mal6g4092 327 ProSiteProfiles Myb-like domain profile. 82 128 IPR001005 -
Mal6g4092 327 CDD SANT 136 176 IPR001005 -
Mal6g4092 327 PANTHER MYB PROTEIN-RELATED 64 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g4092 Mal-Chr6 116838018 116839655 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g4092 81 223 MYB Transcription Factor Family AT1G69560 57.343 4.21e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal6g4092 Myb_DNA-bind_6 5.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g4092 K09422 - gmx:100791795 272.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3244 3 108362143 108363883 Mal6g4092 6 116838018 116839655 PCT