Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g4006 ATGGAATCTCCCAAAAACGACCACATGATTGGAACCGGAGGAGAACAAAGCGACGTCGGTAGAAACTACGAACACGAACATGAACAACAACATCATAACTCTCAAGGCCTTACCGGTGATGGTGCTAGTCCTGGAAAGATATTCATAGGTGGTTTAGCGAGAGAAACGACCATTGCCCAATTTATCAAGCACTTCGGTAAATATGGTGAGATTACTGATTCCGTCATCATGAAGGACAGGAAAACTGGACAGCCTCGTGGATTCGGGTTTATTACTTATGCTGATCCATCTGTGGTTGATAAAGTCATTGAAGACTCTCATATCATCAATAGCAAACAAGTTGAGATTAAGCGGACTATACCAAGGGGAGCAGTTGGCTCTAAGGATTTTAGGACAAAGAAAATATTTGTAGGTGGTATTCCTTCAAATGTGACTGAAGATGAATTTAGAGACTTTTTCACACGCTATGGAGAAGTCAAAGATCACCAAATAATGCGTGACCACTCAACCAATCGTTCTCGTGGCTTTGGGTTTGTCACCTTTGACACTGAGGAAGCTGTTGATGATCTTCTATCTATGGGGAACAAGATTGAGTTTGCTGGCACTCAGGTGGAAATTAAGAAGGCTGAACCGAAGAAGGCTAACCCACCACCTCCATCATCCAAGCGGTACAATGACTCAAGGTCTTCATACGGAGGTGGTGGGTATGGAGATGCTTATGATGGATTTGGTGGAGGCTTTGGTGGTGTTGGGGGTGGTTACAGCAGGTCAGGCAGTGCTTATGGTGGTAGGGGAGGTCCGTATGGTGGCTATGGAAGTGAGTTTGCTGGGTATGGGGGATATGGCGGAGCAATCGGCGGACCCTACAGAGGAGATCCTTCCCTAGCATATGCAGGTCGTTATGGTGGAAGCTTTAGCAGAGGCTACGATCTTAGTGGGTATGGTGGGCCTGGTGAGAGTTATGGGGCATATGGTGGTGCTGGTGCAGGTGCTGCTGCTGGTGGAGGCGGTTCTTCGGCCGCTGGTGCATATCAAAGTGGCTATGATGCCAGCCTTGGGGGTGGATATGGAGGAGGAGCTAGCGGAGGCTCCTTCTATGGAAGCAGAGGTGGATATGGTGGTGCTGGTCGATATCATCCATATGGAAGATAA 1152 0.4774 MESPKNDHMIGTGGEQSDVGRNYEHEHEQQHHNSQGLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDSHIINSKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEIKKAEPKKANPPPPSSKRYNDSRSSYGGGGYGDAYDGFGGGFGGVGGGYSRSGSAYGGRGGPYGGYGSEFAGYGGYGGAIGGPYRGDPSLAYAGRYGGSFSRGYDLSGYGGPGESYGAYGGAGAGAAAGGGGSSAAGAYQSGYDASLGGGYGGGASGGSFYGSRGGYGGAGRYHPYGR* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g4006 383 SUPERFAMILY RNA-binding domain, RBD 41 123 IPR035979 GO:0003676
Mal6g4006 383 SUPERFAMILY RNA-binding domain, RBD 122 222 IPR035979 GO:0003676
Mal6g4006 383 Gene3D - 14 129 IPR012677 -
Mal6g4006 383 MobiDBLite consensus disorder prediction 1 42 - -
Mal6g4006 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 121 IPR000504 GO:0003723
Mal6g4006 383 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 383 - -
Mal6g4006 383 SMART rrm1_1 134 207 IPR000504 GO:0003723
Mal6g4006 383 SMART rrm1_1 46 117 IPR000504 GO:0003723
Mal6g4006 383 MobiDBLite consensus disorder prediction 207 228 - -
Mal6g4006 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 113 IPR000504 GO:0003723
Mal6g4006 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 135 204 IPR000504 GO:0003723
Mal6g4006 383 MobiDBLite consensus disorder prediction 19 33 - -
Mal6g4006 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 211 IPR000504 GO:0003723
Mal6g4006 383 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 383 - -
Mal6g4006 383 Gene3D - 133 216 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g4006 Mal-Chr6 115369741 115372961 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g4006 45 201 Eukaryotic Initiation Factors Gene Family AT1G71770 27.168 1.10e-10 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g4006 6 115369741 115372961 Mal6g4006 6 115369741 115372961 ECH