Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g4001 ATGACTTCCAGATTCTTTTACCAGGGTGGTGATCACAGTGATACTGACGATGATGAACCTACTGATATTGATGAACCCAGTGATACTGAACAACCACTTCAATCAGATCCAGCCGATAAAAGCAAATACTACGTTGATGGTAATGCTGATGACAGTGACGATGATGATGGACAAAAGCGCGTTGTTAAGTCTGCTAAAGATAAGCGTTTTGATGAGATGGCTTCCACCGTCGATCAGATCAAAAATGCCATCAAAATTAATGACTGGGTCAGCCTTCAAGAGAGCTTTGACAAGATCAACAAACAACTTGAGAAAGTTATGCGTGTTATCGAGTCCCAAAAGCTTCCCAATCTTTATATCAAGGCTCTTGTAATGCTTGAAGATTTCCTCGCTCAGGCTTTGGCCAATAAGGATGCCAAAAAGAAGATGAGTAGCAGCAATGCCAAAGCCTTCAACTCAATGAAGCAAAAATTGAAGAAGAATAATAAGCAATACGAGGACTTGATTAACAAATGCAGGGAGAATTCTGAGAGTGAGGGGGAAAAGGATGAGGACTCTGACGAATATACTTCCGATGATGATGACATTATCGAACCTGATCAGCTCAGGAAGCCCGACCCCATATCAGATTCTGAAACTTCTCAGGTTGGTGATGATGATGGCAAGCTTAATGCTGATGGTGAAGGACCTTGGGATCAAAAGCTTAACAAGAAAGATAGACTTTTGGAGAAACAGTTCATGAAAAACCCTAGTGAGATCACATGGGACACTGTTAACAAGAAGTTCAAAGAGATTCTGGAAGCCAGGGGCAGGAAGGGAACTGGAAGGTTTGAACAGGTTGAGCAGCTTACCTTCCTAACAAAAGTTGCTAAAACACCTGCACAGAAGCTGCAAATTCTTTTCAGTGTCGTTTCTGCTCAGTTTGATGTTAATCCAGGCCTCAGTGGGCATATGCCAATAAATGTGTGGAAAAAGTGTGTGCAGAACATGCTGGTCATTCTCGATATTCTTGTGCAGCACCCAAACATAAAGGTTGATGATTCAGTGGACCTAGATGAGATTGAAACTAAAAAAGGGGCTGACTATAACGGATCCATTCATGTCTGGGGCAACTTAGTTGCTTTCTTAGAAAAAATAGATGCCGAGTTTTTCAAGAGCTTGCAGTGCATAGATCCCCACACACGTGAATATGTTGAGAGACTCAGGGATGAGCCCGTGTTTGTTGTTCTTGCACAGAATGTCCAGGAATATCTTGAAAACATTGGAGATTTCAAAGCTTCTTCTAAGGTGGCCTTGAAGAGGGTTGAACTCATTTACTACAAACCACAAGAGGTTTACGAGGCAACCAGAAAATTGGCTGAGATGACAGAAGATGGAGATAATGGAGAGGAGGCGAGTGAGGAGTTAAAAGGTTTTGAGGATACAAGAATTCCTGCTCCATTTGTTGTTACCCCGGAACTTGTGGCGCGGAAACCCACCTTCCCGGAGAATAGCAGGGCCTTAATGGATGTGTTAGTATCACTAATATACAAATACGGAGACGAGCGCACTAAAGCACGTGCAATGCTTTGTGATATATATCACCATGCTCTTCTTGATGAGTTCGCAGTAGCCCGTGATTTGTTACTTATGAGTCATTTGCAAGAAAATGTTCACCACATGGACATTTCGACACAAATTCTTTTTAACAGGGCTATGTCACAGTTAGGTCTATGTGCTTTTCGGGTTGGGCTGGTTTCTGAAGCACATGGCTGCTTGTCTGAACTTTATTCTGGTGGACGGGTGAAAGAATTGCTTGCACAAGGAGTTTCTCAGAGTCGTTATCATGAAAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGGCAGATGCCATATCATATGCATATAAATCTTGAGCTCCTGGAATCAGTGCATCTTACATCTGCTATGCTGCTGGAAGTTCCCAACATGGCAGCCAATGTTCATGATGCAAAGCGTAAGATCATCAGTAAGAATTTCCGCCGTTTGCTTGAGGTCAGTGAGAAACAAACATTCACTGGTCCTCCTGAAACTGTCAGGGATCATGTTATGGCTGCCACAAGGGTTCTTATTAATGGAGATTTCCACAAGGCCTTTGACATTATTGCATCTCTTGACGTTTGGAAATTTGTGAAAAATCGAGACACCGTGCTAGAAATGCTGAAGGACAAAATCAAGGAGGAGGCACTTAGGACATACCTATTTACCTTCTCTTCATCATACGATTCTTTAAGCGTGGATCAGCTCACAAATTTTTTCGATCTCTCTCCTCCTCGTGTTCATAGTATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGATCAACCATCTGGGTGCATTATTTTCAGAAATGTTGAACACTCAAGGGTGCAGGCTTTGGCATTCCAGTTGACTGAGAAATTATCTATCCTTGCAGAGAGTAATGAAAGAGCTACAGAAGCAAGGTTAGGCGGCGGTGGGTTGGATCTGCCTCCAAGGCGGAGGGATGGGCAGGATTATGCTGCTGCAGCTGCTGGTGGTGGTGGTGGTGGAACGTCTTCAGGTGGCAGGTGGCAAGACTTGTCCTATTCTCAAACTAGGCAAGGCAGTGGACGTGCAGGATCTGGTGGAAGGGCATTGTCATTCGGTCCAGCTGGTGGGAGTGGCGGCTATTCAAGAGGACGGGGGACTGGTGGAGGTGGCTATCAGAATTCAGGGAGGACTCATGGGGGTTCAGCACTGAGGGGACCTCACGGAGATACTTCTACCCGCATGGTCAGCCTTAGGGGAGTTCGTGCTTGA 2814 0.4442 MTSRFFYQGGDHSDTDDDEPTDIDEPSDTEQPLQSDPADKSKYYVDGNADDSDDDDGQKRVVKSAKDKRFDEMASTVDQIKNAIKINDWVSLQESFDKINKQLEKVMRVIESQKLPNLYIKALVMLEDFLAQALANKDAKKKMSSSNAKAFNSMKQKLKKNNKQYEDLINKCRENSESEGEKDEDSDEYTSDDDDIIEPDQLRKPDPISDSETSQVGDDDGKLNADGEGPWDQKLNKKDRLLEKQFMKNPSEITWDTVNKKFKEILEARGRKGTGRFEQVEQLTFLTKVAKTPAQKLQILFSVVSAQFDVNPGLSGHMPINVWKKCVQNMLVILDILVQHPNIKVDDSVDLDEIETKKGADYNGSIHVWGNLVAFLEKIDAEFFKSLQCIDPHTREYVERLRDEPVFVVLAQNVQEYLENIGDFKASSKVALKRVELIYYKPQEVYEATRKLAEMTEDGDNGEEASEELKGFEDTRIPAPFVVTPELVARKPTFPENSRALMDVLVSLIYKYGDERTKARAMLCDIYHHALLDEFAVARDLLLMSHLQENVHHMDISTQILFNRAMSQLGLCAFRVGLVSEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLTSAMLLEVPNMAANVHDAKRKIISKNFRRLLEVSEKQTFTGPPETVRDHVMAATRVLINGDFHKAFDIIASLDVWKFVKNRDTVLEMLKDKIKEEALRTYLFTFSSSYDSLSVDQLTNFFDLSPPRVHSIVSRMMINEELHASWDQPSGCIIFRNVEHSRVQALAFQLTEKLSILAESNERATEARLGGGGLDLPPRRRDGQDYAAAAAGGGGGGTSSGGRWQDLSYSQTRQGSGRAGSGGRALSFGPAGGSGGYSRGRGTGGGGYQNSGRTHGGSALRGPHGDTSTRMVSLRGVRA* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g4001 937 SMART PINT_4 727 815 IPR000717 -
Mal6g4001 937 Pfam PCI domain 666 794 IPR000717 -
Mal6g4001 937 ProSiteProfiles PCI domain profile. 626 798 IPR000717 -
Mal6g4001 937 MobiDBLite consensus disorder prediction 215 237 - -
Mal6g4001 937 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 936 - -
Mal6g4001 937 Gene3D - 733 802 IPR036388 -
Mal6g4001 937 MobiDBLite consensus disorder prediction 1 65 - -
Mal6g4001 937 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 44 658 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mal6g4001 937 SUPERFAMILY "Winged helix" DNA-binding domain 722 797 IPR036390 -
Mal6g4001 937 MobiDBLite consensus disorder prediction 824 937 - -
Mal6g4001 937 MobiDBLite consensus disorder prediction 171 237 - -
Mal6g4001 937 MobiDBLite consensus disorder prediction 180 195 - -
Mal6g4001 937 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 936 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mal6g4001 937 Coils Coil 148 175 - -
Mal6g4001 937 MobiDBLite consensus disorder prediction 859 876 - -
Mal6g4001 937 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 3 878 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mal6g4001 937 MobiDBLite consensus disorder prediction 43 65 - -
Mal6g4001 937 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 727 815 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g4001 Mal-Chr6 115285773 115292610 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g4001 1 937 Eukaryotic Initiation Factors Gene Family AT3G56150 66.241 0.0 1146