Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3993 ATGGCCTCAAGCTACTCAAATTCTCCATGTGCTGCTTGCAAGTTTCTAAGAAGAAAATGCAACCAAGATTGCATATTTGCACCTTATTTCCCACCAGAAGAGCCTCATAAATTTGTCAATGTTCACAAAATATTTGGTGCAAGCAATGTTAGCAAAATTCTAAATGAAGTTTTACCTCATCAAAGGGAAGATACAGTGAACTCTCTAGCCTATGAAGCTGAAGCAAGGATTAAAGATCCAGTGTATGGTTGTGTTGGAGCTATTTCAGTGCTTCAAAGACAACTCCTTAGGCTTCAAAAGGAACTTGATGCTACTAATGCTGATTTGATTCGTTTTACTCATCAAGGTTCTTCTTCTTCTTCTTCTTCTCTTGGCTTAGGACATAATCACTCTCATGGTTTTTTTAATTACCCTTCTAATTTGAGCAATGATTAA 435 0.3678 MASSYSNSPCAACKFLRRKCNQDCIFAPYFPPEEPHKFVNVHKIFGASNVSKILNEVLPHQREDTVNSLAYEAEARIKDPVYGCVGAISVLQRQLLRLQKELDATNADLIRFTHQGSSSSSSSLGLGHNHSHGFFNYPSNLSND* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3993 144 Pfam Lateral organ boundaries (LOB) domain 9 105 IPR004883 -
Mal6g3993 144 Coils Coil 88 108 - -
Mal6g3993 144 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Mal6g3993 144 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 119 - -
Mal6g3993 144 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 2 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3993 Mal-Chr6 115140639 115141073 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3993 3 125 AS2 family AT3G27650 76.423 6.00e-70 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mal6g3993 LOB 1.5e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3993 - - gmx:100788656 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g3993 6 115140639 115141073 Mal6g3993 6 115140639 115141073 ECH