Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3987 ATGGCTCCTTCAAAATCCCGATCCTTCTTCAACCTCACCACTTCTCGCGAGCTCAATTCCTTCCAAGTTCAAAAAAGACCTAATTACGATGGATGGTTTCACGGATTCTTAGATGTTGGAGCTGTAGCTACTCAGCATAACGGTGAAGACGTTGTTCCTCTTGCTCTTTCATTTGCTAAGACTTCGAAATGTTCGTATATTCTTGCTTGTTCTGATGAGGAGGGATATGTTAGCTTTTTTGATACTCGTCGAAAATTTGCGGTGCCTTTGTGTCTAGAAAGAAATGCAGAGGAAGCAAGGATTTGTGAATGGAGTTCGCATAATAATGCAGTTTTTGATGTCTCTTGGATTAAGGATGATACACAGATCCTAACTGCTTCTGGTGATCAAACGGTTAAGGTATGGGATGTTCAAGAAAAGAAATGTCTTGGAGTGTTAATCGGGCACACAGGGAGTGTGAAATCTATTTGTTCTCATCCAACTAATTCCGATATTCTCGTATCTGGTTCAAGAGATGGATGTTTTCGTCTTTGGGACTTAAGATGCAACTCCAATTCTAATAGACGTGGAGAAGTTAGCATATGTTCAACGGATGTTGTCAAAGGAGCACATGTTTCATATCAAGCACTACGCCCAAGGAGGAGCAAGGTTGGTTCCAATAGTGTTACATCTGTTCTTTGGCTCAAGGATCAAGTTTCCATAGCCACTGCTGGGGCAGCAAATAGTGTGCTGAAGTTTTGGGATTCCAGAAATTTAAAAAGGATTGTCACACAAGCATGTCCTGAACCAGGAAAGCATAGATTCCACGGTATATCTAGCTTGTCCCAAGATGACAGTGGACTTTTGATTTCAGCTTCCTGCATGGATAGCCGAGTTTATCTATATAATACACTTCAACTTGACAAGGGGGCTTTAAGATATTTTGAAGGAGGTCGTATAGATTCATTTTTTGTGAAGGCTGCAATTAGCCCCGACGCATCTAACATAGTTTGCGGTTCTAGTATTGGAAAAGCATATGTTTGGCAGGTTGACAAGCCTCAAGTGGAACCTACTATTTTGAAGAGTCATGATGAGGAAGTTACTGCAGTTGACTGGTGCCGCTCTGACATTGGAAAATTAGCAACTGCTTCTGATGATAACTCAATCCGGATATGGAATAAACGAAGTTATGTTACCACAACAAAGACTCCATTTGCCATCCGAAGAAGGATTATGGCCATGCCTAGAATAGAGTGCAAAATGCTATTAGACAATGAAGAAACTTGTCCCAAGTCAAGTGACTATGGTCTACTATTCAATGAAGAACCGCACAACCCAATAAAGTCAGCCACTCCAATCACACCACCTAAATCAACTATATCTGAAGGCCACAAGGACCAGCTTTCATCAGAATTTGATCTAACTGCATCTCCTAAAAATACACCAGAGTCTGCTTTGAAGAGCCCTTCGTCTGTATTGAATCCACCGCCATCCCTAAAGAGAACTATTCGGGACTACTTTGTAGCATCTTCTTGA 1515 0.4139 MAPSKSRSFFNLTTSRELNSFQVQKRPNYDGWFHGFLDVGAVATQHNGEDVVPLALSFAKTSKCSYILACSDEEGYVSFFDTRRKFAVPLCLERNAEEARICEWSSHNNAVFDVSWIKDDTQILTASGDQTVKVWDVQEKKCLGVLIGHTGSVKSICSHPTNSDILVSGSRDGCFRLWDLRCNSNSNRRGEVSICSTDVVKGAHVSYQALRPRRSKVGSNSVTSVLWLKDQVSIATAGAANSVLKFWDSRNLKRIVTQACPEPGKHRFHGISSLSQDDSGLLISASCMDSRVYLYNTLQLDKGALRYFEGGRIDSFFVKAAISPDASNIVCGSSIGKAYVWQVDKPQVEPTILKSHDEEVTAVDWCRSDIGKLATASDDNSIRIWNKRSYVTTTKTPFAIRRRIMAMPRIECKMLLDNEETCPKSSDYGLLFNEEPHNPIKSATPITPPKSTISEGHKDQLSSEFDLTASPKNTPESALKSPSSVLNPPPSLKRTIRDYFVASS* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3987 504 ProSitePatterns Trp-Asp (WD) repeats signature. 123 137 IPR019775 -
Mal6g3987 504 Gene3D - 307 407 IPR015943 GO:0005515
Mal6g3987 504 Gene3D - 187 306 IPR015943 GO:0005515
Mal6g3987 504 MobiDBLite consensus disorder prediction 463 490 - -
Mal6g3987 504 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 188 IPR001680 GO:0005515
Mal6g3987 504 Pfam WD domain, G-beta repeat 141 179 IPR001680 GO:0005515
Mal6g3987 504 Pfam WD domain, G-beta repeat 352 386 IPR001680 GO:0005515
Mal6g3987 504 Pfam WD domain, G-beta repeat 104 136 IPR001680 GO:0005515
Mal6g3987 504 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 181 - -
Mal6g3987 504 PRINTS G protein beta WD-40 repeat signature 123 137 IPR020472 -
Mal6g3987 504 PRINTS G protein beta WD-40 repeat signature 373 387 IPR020472 -
Mal6g3987 504 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Mal6g3987 504 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 353 386 - -
Mal6g3987 504 ProSiteProfiles Trp-Asp (WD) repeats profile. 353 386 IPR001680 GO:0005515
Mal6g3987 504 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 104 138 - -
Mal6g3987 504 SMART WD40_4 139 179 IPR001680 GO:0005515
Mal6g3987 504 SMART WD40_4 346 386 IPR001680 GO:0005515
Mal6g3987 504 SMART WD40_4 97 136 IPR001680 GO:0005515
Mal6g3987 504 SMART WD40_4 301 342 IPR001680 GO:0005515
Mal6g3987 504 SMART WD40_4 209 248 IPR001680 GO:0005515
Mal6g3987 504 SMART WD40_4 261 296 IPR001680 GO:0005515
Mal6g3987 504 Gene3D - 8 186 IPR015943 GO:0005515
Mal6g3987 504 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 1 502 - -
Mal6g3987 504 PANTHER BNAA06G31940D PROTEIN 1 502 - -
Mal6g3987 504 MobiDBLite consensus disorder prediction 439 492 - -
Mal6g3987 504 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 145 IPR001680 GO:0005515
Mal6g3987 504 SUPERFAMILY WD40 repeat-like 62 393 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3987 105 293 U-box Gene Family AT2G33340 25.581 4.33e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3987 K11790 - gmx:100775857 645.195