Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3976 ATGGGTCGTGGAAGAATATCTATGGAACTCATTCAAAATGAGAAATCTAAAAAGACAACATTTCAAAAGAGAAAGAATGGTTTAATGAAAAAAGTGAGGGAATTTTCCATTCTTTGTGATGTTGATGTTTGTGTGATTCTTTATGCTCCCAACTTTGAAGGCCAAGGATATGATGAACCTGAAACATGGCCTAAAGACAGAAGAGGTGTGCAAAGAATTCTTCAAAAATACTGTAACACAACAATTGATAGGCGTCCTAAGATCTATGATGTTCAAGAATATTTTAAGGAAAGGATGAGTAAAGTTGAATTTGAGATTTCCAAATTGCGAAAAGAGAAGTTAAAGATGATATATCCAACTTGGGATGAATCTTTCAATTCTCTTGGAGATGAACAATTGAGGTTTTTTATTAGGCAGTTGGATTATAAGATTGAGGCATGTAATCAAAAGATGAATATGCTAAAAGGAGAACTTATGGAAAAATCAATAGCTCATGAATCCCACAAGGTTGATAACCTTATTAGTTCTCCTTACTTGGGCTTAAATCCAAGTAGCTACTACAATTTCATGCATAACAACATGTCTCAAGCACAAACTTATCCTCCATTGATGAATATTAGTGATAAAAATCCCTTGGGATTTTGGCCACTTCAATTGGGACAAAGCTCTCAACCTTCTCCTAGGGTTTTTAGTTCACAAAGCTCTCAACCTTCTTCTATGGTTTCCGGTGCACAAAGCTCCTACCATGTAGAGTCCGAGGCGAGTAGATATACGCAATCTTACCCTTGCAAGCATATTGATGCTAATGTTACCTACGATCCCAAAATCGGTATGAAAATGAAGGATGAAGCTGAAAATGATAAAAACTTGCCACCATACTATTACAATGGAAATGCAATGATAATGCAACCATATCCTATTTCTATGCCTACTCTTCCTTTTCAGAATCTTTCAAACCTATCCTATGAATATCTACTTAATGGATCCTATGATATAGATATTGTTCAAGCTCAAATGTTCAACTACATGGATGGAAGGAAGTAG 1044 0.3544 MGRGRISMELIQNEKSKKTTFQKRKNGLMKKVREFSILCDVDVCVILYAPNFEGQGYDEPETWPKDRRGVQRILQKYCNTTIDRRPKIYDVQEYFKERMSKVEFEISKLRKEKLKMIYPTWDESFNSLGDEQLRFFIRQLDYKIEACNQKMNMLKGELMEKSIAHESHKVDNLISSPYLGLNPSSYYNFMHNNMSQAQTYPPLMNISDKNPLGFWPLQLGQSSQPSPRVFSSQSSQPSSMVSGAQSSYHVESEASRYTQSYPCKHIDANVTYDPKIGMKMKDEAENDKNLPPYYYNGNAMIMQPYPISMPTLPFQNLSNLSYEYLLNGSYDIDIVQAQMFNYMDGRK* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3976 347 CDD MADS_SRF_like 2 77 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal6g3976 347 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Mal6g3976 347 MobiDBLite consensus disorder prediction 224 245 - -
Mal6g3976 347 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Mal6g3976 347 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal6g3976 347 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal6g3976 347 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal6g3976 347 PANTHER MADS BOX PROTEIN 3 226 - -
Mal6g3976 347 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 3 226 - -
Mal6g3976 347 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal6g3976 347 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Mal6g3976 347 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3976 Mal-Chr6 114926057 114927100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3976 1 249 Type I MADS-box Gene Family AT5G55690 31.873 2.47e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal6g3976 SRF-TF 2.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3976 - - mtr:MTR_1g114730 445.277