Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3975 ATGGGTCGTGGAAGAATATCTATGGAACTCATTCAAAAGAAGAATTCTAGAAAGGCAACATTTCAAAAGAGAAAGAATGGATTAATGAAAAAGGTGAGGGAATTTTCTATTCTATGTGATGTTGATGTTTGTGTGATTCTCTATGCTCCCAATTTTGAAGGCCAGGGATATGATGAACCTGAAACATGGCCTAGAGACACAAGAGAGGTACAAAGAATTCTTCAAAAGTATTGTAACACAACAATTGATAGGCGTCCTAAGATCTATGATGTTCAAGAATATTTTAAGGAAAGGATGAGTAAAGTTGAATTTGAGATTTCCAAAGTGCGGAAAGAGAAGTTAAAGATGATGTATCCAACTTGGGATCAATCTTTCAATTCTCTTGAATATGAACAATTGAGGTTATTTGCTAGGCAGTTGGATTCTAAGCTTGATGCATGTATTCAAAAGATGAATATGCTGAAAGGAGATCTTAAGGAAAAATCAATAGCTCATGAATCAAACAAGGCTGATAACCTTATTAGTTCTCCTTACTTGGCCTCAAATTCAAGTAGCTACTTCAATCTCATTCAAAACAACATGTCTCAAGCACAAATTTATCCTCAAATGATGAATATGAGTGATAAAACCCCCTTAGGGTTTTGGCCACTTCAGCTGGGACAAAGCTCTCAACCTTCATTTATGGCTCCCAGTGCACAAAGCTCCTATCAAGTGGAGTTTGAGGCGGATAGATATGCGCGGTCTTATCCTTGCAAGCAAGTTGATGCTAATTGGGTCCATCAGGTTGATGCTAATGTTACCTATGATCCGAAAATCGGTGCGAAAATGAAGGATGAAGCTGAAAATGATGAAAAATTGTCATCATACTATTACAATGGAAATGCAATGACAATGCAACAATATCCTATTGGTATGCACACTCTTCCTTTCAAGAATCTTCCAAACCTATCACATGAATATCTACTTAATGGATCCTATGATATAGATATGCTCCAAGCTCAAATGTTCAACTACAAGGATGGAAGGAAGTAG 1032 0.3682 MGRGRISMELIQKKNSRKATFQKRKNGLMKKVREFSILCDVDVCVILYAPNFEGQGYDEPETWPRDTREVQRILQKYCNTTIDRRPKIYDVQEYFKERMSKVEFEISKVRKEKLKMMYPTWDQSFNSLEYEQLRLFARQLDSKLDACIQKMNMLKGDLKEKSIAHESNKADNLISSPYLASNSSSYFNLIQNNMSQAQIYPQMMNMSDKTPLGFWPLQLGQSSQPSFMAPSAQSSYQVEFEADRYARSYPCKQVDANWVHQVDANVTYDPKIGAKMKDEAENDEKLSSYYYNGNAMTMQQYPIGMHTLPFKNLPNLSHEYLLNGSYDIDMLQAQMFNYKDGRK* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3975 343 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal6g3975 343 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal6g3975 343 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal6g3975 343 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal6g3975 343 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal6g3975 343 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 3 237 - -
Mal6g3975 343 CDD MADS 2 51 - -
Mal6g3975 343 PANTHER MADS BOX PROTEIN 3 237 - -
Mal6g3975 343 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Mal6g3975 343 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Mal6g3975 343 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3975 Mal-Chr6 114916189 114917220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3975 1 144 Type I MADS-box Gene Family AT5G55690 37.241 1.49e-23 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal6g3975 SRF-TF 2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3975 - - mtr:MTR_1g114730 462.611