Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3970 ATGGCTGCTACAGCAACTGCCGCAGTGGGTCCACGGTATGCACCAGCTGATCCGACACTTCCAAAACCATGGAAGGGTCTTGTGGATGGCAAGACTGGGTATCTTTACTTTTGGAATCCTGAGACTAATGTCACTCAGTACGAGAGGCCTTCAAGCGCAGCTGCACCACCAAAGACTTCTTCAGTGCCTAGCTCTTCTGTCCAGGTTCATCAATCATCTCAAGGGCGTGGTCGCAGTCCTGATTTCAGTGATCGGTATGACAGGAATGGAAATGGCAGGTCAAATGAAAGTGGATCCCGGAACCAGCAGAGTTCCAAAGGTGGCAGTTTTAGTTCTCATAATGATGTTGCAAATGGAACACCTGTTGCTGGAAATGGTAGTTCTATGAAAAGTCAAGCACCATCAGATGCAGGACCTGCATTATCTCCAGATGCTTATAGACGTCGTCATGAGATCACTGTTACTGGAGATAATGTGCCTCCACCTGTTACATCATTTGCGTCTTCTGGCTTTCCAACTGAGATTCTTAGAGAGGTGCAAAATGCTGGGTTCTCAGCCCCAACTCCAATTCAGGCACAATCGTGGCCCATTGCCCTTCAAAGTAAAGATATAGTTGCCATTGCTAAAACAGGTTCAGGGAAAACCTTGGGGTATTTACTTCCAGCATTTATTCACCTCAAGCGTACTAATAATAATGCCAAAATGGGCCCCACTGTATTGGTACTTTCACCAACAAGAGAGTTGGCAACACAGATTCAAGATGAAGCTGTGAAGTTCAGTAAAACATCAAGAATTGCCTGCACTTGTTTATACGGAGGGGCACCAAAGGGTCCTCAATTGAAAGATATTGACCGTGGAGCAGATATTGTGGTAGCAACTCCTGGTCGCTTGAACGACATTCTTGAGATGAGGAGAATCAGTCTTCATCAGGTCTCTTACCTAGTGCTAGATGAGGCAGACAGGATGCTGGATATGGGTTTTGAACCTCAAATTAGGAAGATTGTGAATGAGGTGCCTGCTCGCAGGCAAACTCTCATGTTTACTGCAACATGGCCTAAGGAGGTTAGGAGAATTGCAGCTGATCTGCTGGTCAATCCTGTCCAGGTGAACATTGGCAATGTAGACGAGCTTGTTGCTAACAAGTCCATTACTCAGCATATTGAAGTTTTGACATATGTGGAGAAACAGCGACGACTGGAAAGTATTTTGCGGTCACAGGAACAAGGGTCAAAGATAATTATTTTTTGTTCGACCAAGAAAATGTGTGATCAGCTTGCGCGTAATCTTACACGCCAGTTTGGGGCTGCTGCTATTCATGGGGATAAATCCCAGGCTGATAGGGATCATGTGTTGAATCAGTTTCGAAGTGGAAGGACTCCCGTGCTTGTAGCCACAGATGTTGCAGCTCGTGGACTGGACGTCAAAGACATTAGAGTGGTTGTCAACTTTGACTTCCCTACTGGAGTTGAGGATTATGTTCATAGGATTGGTAGGACTGGGAGGGCCGGAGCCACTGGTATAGCTTACACTTTCTTTGGGGACCAGGATGCTAAACATGCTTCAGATCTCATCAAAATCTTAGAGGGTGCAAACCAGCGAGTTCCTCCAGAACTTCGTGAATTGTCATCCAGGGGTGGTGGTGGGTTTAGCAGATCCAAATATCGTTCTGGTGGCCGTGGTGACTCTGGATTCGGTGCAAAGAGTTATGACTCTGGGTATGGTGGAAAGGGTAATGATGGAGGATATGGCGGAAGAGGCGGTGATTCAAATTATGGAGGAAGGGGTGGATATGGGTCTTCTGCTGCTTTTGGCAGAGGTGGAGGCCGTGGATTTGACAATGACTCACACAGGAATGAACGTGATCGAAGCCCTGACAGAGGCTCTAGCTGGAGCGATCGCTTCAAAACTGTCAATCGTGAACGCAGTCGTAGTCCTGTCAAGGGTGGACCATCTCAAAATGCCCCGGTCAGCTTTCACCAAGCAATGATGCAACGCAGTGGAGGTGGTAGTGATCGCAACAAGAGCTTTAACCGGGAGCGAAGCCGCAGTCCTAGTCCTTATAGACAGGACAGGGCCCCAGCAGGCGGCGATAGGTCTAACAGTAGTCCTCAGAAAGGGTGGGGAGGATCTTCAGGTGATGGAAGAAATGGTGGTGCTCATTCTTACAATGGAGAATTGGAGGAAGGGATGATTCCTGATGAAGAAGGAATGATAAATTAG 2220 0.4734 MAATATAAVGPRYAPADPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPSSAAAPPKTSSVPSSSVQVHQSSQGRGRSPDFSDRYDRNGNGRSNESGSRNQQSSKGGSFSSHNDVANGTPVAGNGSSMKSQAPSDAGPALSPDAYRRRHEITVTGDNVPPPVTSFASSGFPTEILREVQNAGFSAPTPIQAQSWPIALQSKDIVAIAKTGSGKTLGYLLPAFIHLKRTNNNAKMGPTVLVLSPTRELATQIQDEAVKFSKTSRIACTCLYGGAPKGPQLKDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPARRQTLMFTATWPKEVRRIAADLLVNPVQVNIGNVDELVANKSITQHIEVLTYVEKQRRLESILRSQEQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQADRDHVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNFDFPTGVEDYVHRIGRTGRAGATGIAYTFFGDQDAKHASDLIKILEGANQRVPPELRELSSRGGGGFSRSKYRSGGRGDSGFGAKSYDSGYGGKGNDGGYGGRGGDSNYGGRGGYGSSAAFGRGGGRGFDNDSHRNERDRSPDRGSSWSDRFKTVNRERSRSPVKGGPSQNAPVSFHQAMMQRSGGGSDRNKSFNRERSRSPSPYRQDRAPAGGDRSNSSPQKGWGGSSGDGRNGGAHSYNGELEEGMIPDEEGMIN* 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3970 739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 519 IPR027417 -
Mal6g3970 739 Pfam Helicase conserved C-terminal domain 395 503 IPR001650 -
Mal6g3970 739 ProSiteProfiles WW/rsp5/WWP domain profile. 18 52 IPR001202 GO:0005515
Mal6g3970 739 MobiDBLite consensus disorder prediction 610 642 - -
Mal6g3970 739 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 164 192 IPR014014 GO:0003724
Mal6g3970 739 Gene3D - 142 373 IPR027417 -
Mal6g3970 739 Pfam WW domain 20 50 IPR001202 GO:0005515
Mal6g3970 739 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 195 369 IPR014001 -
Mal6g3970 739 MobiDBLite consensus disorder prediction 645 671 - -
Mal6g3970 739 Gene3D - 374 544 IPR027417 -
Mal6g3970 739 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 385 542 IPR001650 -
Mal6g3970 739 Gene3D - 15 63 - -
Mal6g3970 739 CDD WW 21 50 IPR001202 GO:0005515
Mal6g3970 739 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 315 323 IPR000629 -
Mal6g3970 739 MobiDBLite consensus disorder prediction 92 135 - -
Mal6g3970 739 MobiDBLite consensus disorder prediction 672 686 - -
Mal6g3970 739 SMART ultradead3 183 386 IPR014001 -
Mal6g3970 739 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 127 620 - -
Mal6g3970 739 MobiDBLite consensus disorder prediction 1 25 - -
Mal6g3970 739 CDD SF2_C_DEAD 383 512 - -
Mal6g3970 739 SMART ww_5 19 52 IPR001202 GO:0005515
Mal6g3970 739 MobiDBLite consensus disorder prediction 535 582 - -
Mal6g3970 739 SUPERFAMILY WW domain 12 51 IPR036020 GO:0005515
Mal6g3970 739 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 127 620 - -
Mal6g3970 739 MobiDBLite consensus disorder prediction 602 739 - -
Mal6g3970 739 ProSitePatterns WW/rsp5/WWP domain signature. 24 50 IPR001202 GO:0005515
Mal6g3970 739 MobiDBLite consensus disorder prediction 47 79 - -
Mal6g3970 739 MobiDBLite consensus disorder prediction 47 143 - -
Mal6g3970 739 Pfam DEAD/DEAH box helicase 188 357 IPR011545 GO:0003676|GO:0005524
Mal6g3970 739 MobiDBLite consensus disorder prediction 695 709 - -
Mal6g3970 739 SMART helicmild6 423 503 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3970 Mal-Chr6 114868596 114872653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3970 162 541 Eukaryotic Initiation Factors Gene Family AT3G19760 33.333 1.22e-62 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3970 K12823 - gmx:100816455 1055.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g3970 6 114868596 114872653 Mal6g3970 6 114868596 114872653 ECH