Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3913 ATGGAGTCTGGTCGTCTTTACTTTGATTCTTCTGCTTGTCGTGGGAATAACATGAACATGCTCTTTCTTGGAAATGCTGATCTTGGTTTTCGAGGAAGGTCAATGATGAGCATGGAGGAAGGCTCAAAGAGGAGACCTTTCTTTAGCTCACCGGATGAACTCTATGATGAGGAGTATTACGAAGAGCAGTCGCCGGAGAAGAAGCGCCGCCTCACTTCCGAGCAGGTCCATATGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGGAAAACTCAGTTGGCCAAGAAGCTAGGGTTGCAACCTAGGCAGGTGGCTGTGTGGTTCCAGAACCGTAGGGCTAGGTGGAAGACCAAACAACTTGAAAGAGATTATGATGTTCTCAAATCTTCCTATGATACCCTACTTTCAACCTATGATTCCATTATGAAGGAGAATGACAAACTCAAATCTGAGGTGGTATCCTTAAATGAGAAGCTTCAAGTTCAAGTTAAAGATATGCTTGAAGAACCTTTGCCAGAAAAGAAAGCTGATCCACTTCCAGTGGACATAGCTCAGATTTTTAGCATAAAGGTGGATGACCACATGAGTTCTGGAAGTGTTGGAAGTGCGGTGGTGGACGAGAGTAGCCCCCGTGTCGTTGGTGTCGTTGTTGACAGCGTCGACTCATACTTTCCAGCTGACAACTATGTTGGATGTGTGGACCCTATTGAAAGAGTTCAATCAGAGGAGGATGATGGAAGTGATGATGGGAGGAATTACTTTGATGTGTTTGTTGCATCTGAAACTGAGCAACATAACCATGAAGAGGGAGAGGCATTGAATTGGTGGGGTAATATGTATTATGTTGCATAA 864 0.4468 MESGRLYFDSSACRGNNMNMLFLGNADLGFRGRSMMSMEEGSKRRPFFSSPDELYDEEYYEEQSPEKKRRLTSEQVHMLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDTLLSTYDSIMKENDKLKSEVVSLNEKLQVQVKDMLEEPLPEKKADPLPVDIAQIFSIKVDDHMSSGSVGSAVVDESSPRVVGVVVDSVDSYFPADNYVGCVDPIERVQSEEDDGSDDGRNYFDVFVASETEQHNHEEGEALNWWGNMYYVA* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3913 287 SUPERFAMILY Homeodomain-like 65 133 IPR009057 -
Mal6g3913 287 SMART HOX_1 65 126 IPR001356 GO:0003677
Mal6g3913 287 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 260 IPR045224 GO:0003700
Mal6g3913 287 Pfam Homeobox associated leucine zipper 122 164 IPR003106 GO:0006355|GO:0043565
Mal6g3913 287 PRINTS Lambda-repressor HTH signature 102 118 IPR000047 GO:0003677
Mal6g3913 287 PRINTS Lambda-repressor HTH signature 93 102 IPR000047 GO:0003677
Mal6g3913 287 ProSiteProfiles 'Homeobox' domain profile. 62 122 IPR001356 GO:0003677
Mal6g3913 287 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 260 - -
Mal6g3913 287 Coils Coil 142 169 - -
Mal6g3913 287 CDD homeodomain 67 123 IPR001356 GO:0003677
Mal6g3913 287 Pfam Homeodomain 67 120 IPR001356 GO:0003677
Mal6g3913 287 ProSitePatterns 'Homeobox' domain signature. 97 120 IPR017970 GO:0000981|GO:0006355
Mal6g3913 287 Gene3D - 60 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3913 Mal-Chr6 113339710 113342316 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3913 1 281 Homeobox Transcription Factor Family AT3G01470 58.537 7.19e-100 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mal6g3913 Homeodomain 2.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3913 K09338 - gmx:100797836 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g3913 6 113339710 113342316 Mal6g3913 6 113339710 113342316 ECH