Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3906 ATGGATGCTTTTTTAACTTGGGTGCTAATAATTGTGGGAATGGTGTTCTTGGTTCTATTTCATGCATGTTTTTCTGAGTGGTTTTCTAGAAGAGGAGGAAGAGGAACAATGATTGATAGTGGAAGAAGAAGCATTTCAAAAATTGATTTGGAGAAGCTTCCATGTTATGATTATGTTGTTAAAAAAAATAGAACTAGCACTACTGATTGTGCAATATGCTTGGAGAATTTCACTATTGGGGATAAGTGTAGATTGTTACCTATTTGCAAGCATAGTTTTCATGCTCATTGTGTGGATCAATGGCTTTTGAAGCATCCCATTTGTCCAATTTGTAGATCTATGGTTGGTTCTCATACTGCAAACAAAGTTGTTATATGTAACAATGGAAGAGAAATCATAGAAAGTGGTCCATCTTAA 417 0.3477 MDAFLTWVLIIVGMVFLVLFHACFSEWFSRRGGRGTMIDSGRRSISKIDLEKLPCYDYVVKKNRTSTTDCAICLENFTIGDKCRLLPICKHSFHAHCVDQWLLKHPICPICRSMVGSHTANKVVICNNGREIIESGPS* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3906 138 CDD RING-H2_PA-TM-RING 69 112 - -
Mal6g3906 138 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 122 IPR013083 -
Mal6g3906 138 SMART ring_2 70 111 IPR001841 -
Mal6g3906 138 Pfam Ring finger domain 69 112 IPR001841 -
Mal6g3906 138 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Mal6g3906 138 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 5 135 - -
Mal6g3906 138 SUPERFAMILY RING/U-box 64 118 - -
Mal6g3906 138 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 5 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3906 Mal-Chr6 113277134 113277550 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3906 43 115 C3H Transcription Factor Family AT1G74410 46.575 2.31e-18 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3906 - K15692 mtr:MTR_6g007680 186.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g3906 6 113277134 113277550 Mal6g3906 6 113277134 113277550 ECH