Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3905 ATGGATTTCTTGTTTATATTTCGTGAGTGTTTTTTCAAAAGAAGCATTTCCAAAACTGATTTGGAGAAGCTTCCATGTTATGATTATGTTGCAAAAGAAAGTGGAAGTAGCCCTTTGGATTGTGCAATTTGTTTGGAGAATTTCACTATTGGGGATAAGTGTAGATTGTTGCCTAATTGTAAGCACATTTTTCATGCTCAATGTGTGGATAAATGGCTTTTGAAGACTCCAATTTGTCCTATTTGTAGATCTAGGGTTTGTTCTCGTAGTGCAAACAAAGTTGTTATAGGTAACAATGGAAGAGAAAGCATCGAAAGTGCTCTATCTAGAAATGTTGGTTTAGAACTAAGAGAAAATAGTCCAACATAA 369 0.3442 MDFLFIFRECFFKRSISKTDLEKLPCYDYVAKESGSSPLDCAICLENFTIGDKCRLLPNCKHIFHAQCVDKWLLKTPICPICRSRVCSRSANKVVIGNNGRESIESALSRNVGLELRENSPT* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3905 122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 92 IPR013083 -
Mal6g3905 122 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 14 119 - -
Mal6g3905 122 SMART ring_2 41 82 IPR001841 -
Mal6g3905 122 SUPERFAMILY RING/U-box 32 88 - -
Mal6g3905 122 ProSiteProfiles Zinc finger RING-type profile. 41 83 IPR001841 -
Mal6g3905 122 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 14 119 - -
Mal6g3905 122 Pfam Ring finger domain 40 83 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3905 Mal-Chr6 113242657 113243025 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3905 11 99 C3H Transcription Factor Family AT4G28890 36.735 2.77e-18 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3905 - K15692 mtr:MTR_6g007670 237.269