Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3894 ATGTCTTTGATTAATCATCAAATTTATCAAAAAGATGGTTACTTTATGAATTTTCCAGCACCATCATCACCATTACCATCAACACAATCTTCATCAAGTTCTTCATCAACAACATCAACACCACCTTCTTCATCTTCTAGTACTAAGATTAGTCCAGCTGTTCTTTTCATCATAGTGGTTCTTGCAGTTTTGTTTTTCATATCTGGTTTACTTCACTTGCTTGTTAGATTTCTCATAAAGAATCCATCTTCATCAAGTTCTTCTAATAGACAGCATCATAATGAAATTTCAACTTCTGATGCACTTCAAAGACAGCTACAACAGCTTTTTCATCTACATGATTCTGGTTTAGATCAAGCTTTCATTGATGCACTTCCTGTTTTTCAATTCAAGGAAATTGTTGGTTTGAATGAGCCTTTTGATTGTGCTGTTTGTTTGTGTGAGTTTACTGAGAAAGATAAGCTTAGATTATTGCCTATGTGTAGCCATGCTTTTCATATAAGTTGTATTGATACTTGGCTACTTTCAAACTCAACTTGTCCTCTTTGTAGAGGAACACTTCAAAGTAATGGATTTTCTATTGAAAATCCGATTTTCGATTTCGATGATCTAAGGGAAGATGATGGTTGTCCTTCTTGTAATGGAGAGAATGGTTTTGGTACTAGACAAAAAGAAATTGTTGTTGAAGAAGTTGTTGATAAAGGGGTTTTACCTGTTCGACTCGGGAAATTCAAGAAGATGAATGCGGAAGTTGGTAGAGATAACGAAGAAGTAGGCGAAACCAGTAGTAGTAATTTGGATGCAAGAAGATGTTTTTCAATGGGATCTTATCAATATGTGGTTGGAAATTCAGAGTTAAGGGTAGCTTTAAACCATGAAAGTAAAATTCGTCATGATACAAGGGTTAACAAAGGAATGGAAAATGGCGCGAATCTTTGTGCGGAGAGTGATTTGGAAGCGAAGAAGATTAGTAATGTTAGTAAAGGTGAAAGTTTTTCTATTTCCAAGATTTGGTTATGGCCAAGGAAGGGAAAATTTTCTTCTAGTTCTTTAGAAACTCATAATGGAATGGCATTGCCATCTTATCTTAACAAAGATTTGCAGCATCATGGGATGAGGGAAACAGATGGTGTATGA 1137 0.3518 MSLINHQIYQKDGYFMNFPAPSSPLPSTQSSSSSSSTTSTPPSSSSSTKISPAVLFIIVVLAVLFFISGLLHLLVRFLIKNPSSSSSSNRQHHNEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQFKEIVGLNEPFDCAVCLCEFTEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLQSNGFSIENPIFDFDDLREDDGCPSCNGENGFGTRQKEIVVEEVVDKGVLPVRLGKFKKMNAEVGRDNEEVGETSSSNLDARRCFSMGSYQYVVGNSELRVALNHESKIRHDTRVNKGMENGANLCAESDLEAKKISNVSKGESFSISKIWLWPRKGKFSSSSLETHNGMALPSYLNKDLQHHGMRETDGV* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3894 378 MobiDBLite consensus disorder prediction 22 48 - -
Mal6g3894 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 192 IPR013083 -
Mal6g3894 378 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Mal6g3894 378 SMART ring_2 142 183 IPR001841 -
Mal6g3894 378 PANTHER RING-H2 FINGER PROTEIN ATL46-LIKE 1 354 - -
Mal6g3894 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 354 - -
Mal6g3894 378 CDD RING-H2_PA-TM-RING 141 184 - -
Mal6g3894 378 Pfam Ring finger domain 141 184 IPR001841 -
Mal6g3894 378 SUPERFAMILY RING/U-box 121 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3894 Mal-Chr6 113062100 113063236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3894 44 350 C3H Transcription Factor Family AT2G18650 40.116 3.47e-57 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3894 - - gmx:100787206 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g3894 6 113062100 113063236 Mal6g3894 6 113062100 113063236 ECH