Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3877 ATGGATAGTTCACAGAATTTGGTAGATTGTGATAGTATTCGTGATAAAGGTATAGAAGTTGATAACTCAAATGGCAATGAAGGTATAGAAGTTGATAACTCAAATGGTAATGAAGGTATAGAAGTTGATAACTCAAATGGTATTGAAGTTATAGAAGTTGATAACTCTAATGCTAGTGAAGATATAGAAGTTGATAACTCTAATGATGATGAAGCACGTTGGAAGCCTGAAACGGGGATGTGTTTTTCTTGCATAGACGATGTTAAAACATTTTATGGAGAGTATGCTTTGAAAAAGGGTTTTGGGTGGAAGATTAGAACATCAAGAAAAGGAGATAATGGAGAGATCTGCTATCTAATTCTTGCTTGCTCAAGAGAGGGATCTAGATTGTCAAAAAAATCGTCAAAAACACTCCCATCTAAGGACAAAAACTGTCCAGCCAAGATTTGTATTAAGTTGGAAGATGATGGTTTGTGGTACATTAAAAGATTTGAATCTAGCCATTCTCACGAGACTAGCCCTACAAAGGCAAGGTTTTTCAGGGCTAACAGGAAAATGAACCGTGTAAAGAGAAAAATCCAAAGCAATGATGATCCAGGAGTGAGGATCAACAAGACTTTTCAATCTCTTGTTAAAGATGTAGGAGGGCATGAAATTACACCATTTTGCGAACGAGACGTGGGAAATTATGTTAACAAGGAACTACGTACAATTGGAAAAGACAACAACACAAGAATGACTGAACTTGAAGCTGAAGTTAAACGAATAAATGAAAGAATGGAGAAGTACCACTCAGAGCTGCTAGAAAAGGTGGAGAGGATGAATGTCAAGATCAATCGAATCACGGATGCCTTTGGTACACTTCAAGGGTGTTACCAGGGTACTCAATCGCAAGTTAAACCAACCAAACAACAGCTTTCTTGTATCCTTGAGTTTGGCGGTGTATCCATGGGGATTGAGTTTGGTGATCTAAACATTAGTCGTGGACCAGCAGGTGCAGGAGCTCTACTGCTTGCTGAAGATGGGACTCTGCTCTATGGATTTCGCCAAGGACTGGGTTATCAAACAAAAGAGTCCGCTGAGTATCGGGCTTTACTCTTAGGATTGAAACATGCAAGTATGAAAGGATTTAAGTATGTTACTGCCAAAGGAGACTCCGAACTTGTTATCAATCAGATTCTTGATCCCTGGAAAATCAAAGACGAGCATTTGAAGAATTTATGTGCCGAGGCTTTGGAGCTGAGCGATAAGTTTCACTCATTCTGCATCCAACACATTTCCAGGGAACGTAACTATGGAGCTGTTCGTAATGCAAACCGGGCCATCAATCTCAATGATGGTCAAGTTGAAGAAAATCATATGCATTAA 1368 0.3918 MDSSQNLVDCDSIRDKGIEVDNSNGNEGIEVDNSNGNEGIEVDNSNGIEVIEVDNSNASEDIEVDNSNDDEARWKPETGMCFSCIDDVKTFYGEYALKKGFGWKIRTSRKGDNGEICYLILACSREGSRLSKKSSKTLPSKDKNCPAKICIKLEDDGLWYIKRFESSHSHETSPTKARFFRANRKMNRVKRKIQSNDDPGVRINKTFQSLVKDVGGHEITPFCERDVGNYVNKELRTIGKDNNTRMTELEAEVKRINERMEKYHSELLEKVERMNVKINRITDAFGTLQGCYQGTQSQVKPTKQQLSCILEFGGVSMGIEFGDLNISRGPAGAGALLLAEDGTLLYGFRQGLGYQTKESAEYRALLLGLKHASMKGFKYVTAKGDSELVINQILDPWKIKDEHLKNLCAEALELSDKFHSFCIQHISRERNYGAVRNANRAINLNDGQVEENHMH* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3877 455 Coils Coil 246 266 - -
Mal6g3877 455 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 249 450 - -
Mal6g3877 455 MobiDBLite consensus disorder prediction 18 39 - -
Mal6g3877 455 Gene3D - 322 447 IPR036397 GO:0003676
Mal6g3877 455 CDD RNase_HI_like 329 442 - -
Mal6g3877 455 Pfam Reverse transcriptase-like 325 441 IPR002156 GO:0003676|GO:0004523
Mal6g3877 455 SUPERFAMILY Ribonuclease H-like 327 434 IPR012337 -
Mal6g3877 455 PANTHER PUTATIVE-RELATED 249 450 - -
Mal6g3877 455 Pfam FAR1 DNA-binding domain 90 172 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3877 Mal-Chr6 112712648 112717156 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mal6g3877 RVT_3 1.5e-22 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3877 - - cam:101513893 258.07