Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3866 ATGGAGATTCACAAAAATACAAACAACAAATGGGGAGGTGCAAAAAAGGAATCAAAATGGAAGAAGATGATTTTCTTCAACACTACAAAAACTACCCAAAACCCACCACAAGAATTTCTCTGCCCCATTTCTGGTTCTCTCATGTCTGACCCTGTAATTGTCTCCTCTGGCCATTCCTTTGACAGAACCTCAATCCAAGCATGTAAAAATCTCAACTTTACCCCCCAACTTGCTGATGGCACCACCCCTAATTTCACAACCTTAATCCCAAATCTTAACCTCAAATCTTCCATTCTCAATTGGACCCAAAACCAAACCCAAACCAAAAACCAAACCAAAGAAAATCTAACAACCACTGAAAACCTCGTACTCAAACTTATGTCTTCAAAACAACATGAACGAAATCAAAACAACCTCGTACTCAAACTAATGTCTTCAAAACAACATCAACGCAATCAAAACAACCTCGTATCAAACAAAAACGACCAAGAAGTAGAAACAAGACCAATCTCAATCTTAACACCACGAAAAACCTCGTACTCTAGCTCAGAGGAATCCATAGCTACTGCCACGTCATCATCATCAACAAGAACAACACCACCACAGCTTCAAAGTTTCTGTTACTCTTCACCTTCATCATCTGAACTTGAACCTTCAACTACACCAGAAGAAGAAGAAATAGTAACAAAACTCAGAAACCAAGACTTGATTATAGTAGAAGAAGCTTTAATCTCTCTCAGAAAAACCACAAAAACGAAAGAGGAAACTAGGGTTCAACTTTGCACCTATAGGGTACTATGTTCTTTGCGTTCTTTGATTTTGTCTAAAAACGAAGTGGTAAAGGTCAATGCACTTGCTTCATTGGTCAACCTTTCACTTGAGAAAGTCAACAAAGTGAAGATCGTGCGGTCAGGAATTGTTCCACCTTTGATCGAGATTTTGAAGTTTGGATCGTGTGAATCCCAAGAACATGCTTCGTGTGCGCTGTTTAGTTTATCGCTTGATGATGATAATAAAACTGCTATTGGTGTTTTAGGTGCTCTTTTGCCTTTGCTTCACGCGCTTAAATCAGAGAGTGAAAAGACGTGCCATGACTCGAGTTTGGCTCTTTGTCATTTGTCTTTAGTGAAGAGTAATAGGGCTAAGATGGTTAAGCTAGGGTTTGTTTCGGTTTTGTTGGGGATGGTTAAGTCGGGTCATATGATGGATCGAGCTTTGTTGATCTTGGGTAATTTAGGGTTTGGATCGGATGGTCGGGCTGCTATGTTGGATGCAGGTGTTGTGGAGTGTTTGGTTGATTTGTTAGGTGGGACCGAGTTGGATTCTGAATTGACCCGAGAGAGTTGTGTTGGAGTTTTGTATACATTGAGTCACGGGGGGTTGAGGTTTAAGGCGGTGGCGAAGGAGGTTGGAGTTGTGGAAATGTTGCAAAAGATGGAGAAAATGAAGAGCGAGAAGGCTAATGAGAAGGTGAGGAGGATATTGGAGACGTTGAGAGAGAAGGAGGTGGAAGAGGAGGAGGTGGATTGGGAGGAGTTGCTTGATTCAGGATTCAGTGGTCGAACTATGAGTCGACTCAGCAGTGGATTGGATGAGTCAAGTGTTAAATCGGGTGAACTGTGA 1623 0.4153 MEIHKNTNNKWGGAKKESKWKKMIFFNTTKTTQNPPQEFLCPISGSLMSDPVIVSSGHSFDRTSIQACKNLNFTPQLADGTTPNFTTLIPNLNLKSSILNWTQNQTQTKNQTKENLTTTENLVLKLMSSKQHERNQNNLVLKLMSSKQHQRNQNNLVSNKNDQEVETRPISILTPRKTSYSSSEESIATATSSSSTRTTPPQLQSFCYSSPSSSELEPSTTPEEEEIVTKLRNQDLIIVEEALISLRKTTKTKEETRVQLCTYRVLCSLRSLILSKNEVVKVNALASLVNLSLEKVNKVKIVRSGIVPPLIEILKFGSCESQEHASCALFSLSLDDDNKTAIGVLGALLPLLHALKSESEKTCHDSSLALCHLSLVKSNRAKMVKLGFVSVLLGMVKSGHMMDRALLILGNLGFGSDGRAAMLDAGVVECLVDLLGGTELDSELTRESCVGVLYTLSHGGLRFKAVAKEVGVVEMLQKMEKMKSEKANEKVRRILETLREKEVEEEEVDWEELLDSGFSGRTMSRLSSGLDESSVKSGEL* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3866 540 Gene3D - 220 339 IPR011989 -
Mal6g3866 540 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 18 527 - -
Mal6g3866 540 MobiDBLite consensus disorder prediction 520 540 - -
Mal6g3866 540 PANTHER U BOX DOMAIN-CONTAINING 18 527 - -
Mal6g3866 540 Coils Coil 472 504 - -
Mal6g3866 540 MobiDBLite consensus disorder prediction 146 218 - -
Mal6g3866 540 ProSiteProfiles U-box domain profile. 34 108 IPR003613 GO:0004842|GO:0016567
Mal6g3866 540 SUPERFAMILY ARM repeat 227 496 IPR016024 -
Mal6g3866 540 Pfam U-box domain 36 105 IPR003613 GO:0004842|GO:0016567
Mal6g3866 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 122 IPR013083 -
Mal6g3866 540 MobiDBLite consensus disorder prediction 146 226 - -
Mal6g3866 540 SUPERFAMILY RING/U-box 31 104 - -
Mal6g3866 540 SMART arm_5 335 375 IPR000225 GO:0005515
Mal6g3866 540 SMART arm_5 415 458 IPR000225 GO:0005515
Mal6g3866 540 SMART arm_5 294 334 IPR000225 GO:0005515
Mal6g3866 540 SMART Ubox_2 38 101 IPR003613 GO:0004842|GO:0016567
Mal6g3866 540 MobiDBLite consensus disorder prediction 519 540 - -
Mal6g3866 540 Gene3D - 340 500 IPR011989 -
Mal6g3866 540 Pfam Armadillo/beta-catenin-like repeat 297 333 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3866 Mal-Chr6 112597530 112599152 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3866 36 540 U-box Gene Family AT5G40140 49.416 5.74e-148 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3866 - - lja:Lj2g3v1020040.1 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g3866 6 112597530 112599152 Mal6g3866 6 112597530 112599152 ECH
Mal6g3866 6 112597530 112599152 Mal3g0077 3 2748631 2754267 PCT