Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3842 ATGAAGAGGGCTAGAGATGATATTTACTCTGCCTCTGCTTCTCAATTCAAACGACCCTTTGGCTCTTCACGTGGTGATTCCTATGGCCAAGGCCCCGGAAATGGAGGTGGAGGTGGCGGAGGCGGAGGAGGAGGAGGTGGGGGAGCAACTACCTCCCAGAAACTGACGACCAATGATGCTTTATCCTATTTGAAGGAAGTGAAAGACATGTTTCAGGATCAAAAAGAAAAATATGATCTGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAGAAGACTGACACTACTGGTGTCATAGCAAGGGTCAAGGAACTGTTCAAAGGTCACAACAATTTGATTTTTGGATTTAATACTTTCCTGCCAAAGGGGTATGAGATAACACTTGATGAGGATGAGGATGAGGCTCCTCCGAAGAAAACAGTTGAATTTGAAGAAGCTATTAGTTTCGTGAACAAGATAAAGAGACGTTTCCAAAATGATGAACATGTTTATAAATCATTCTTGGACATTTTGAATATGTATCGCAAAGAGCACAAGACCATCACCGAGGTTTATAGTGAGGTTGCTACCCTTTTTAAGTCGCATGGAGATTTGCTCGATGAGTTCACTAGATTCTTACCAGATAATTCTTCAGCACCTTCCACACAACATGCTCCATTTGGTCGAAATTCATTGCAACGCTTCAATGAGCGGGGTTCTATGGCACCCATGATGCGGCAAATGCAAGTAGATAAGCAACGATATCGGCGAGACCGATTTTCTTCTCATGATCGTGATATGAGTGTTGAACGTCCTGATCTGGATGATGACAAAACAATGATGAACTTCCACAAGGAGCAGAGGAAGCGTGAGAGCAGGGATAGAAGGATTCGCGATCATGATGATAGAGAACATGATCTTGATAACAGCAGGGATTTGAACTCACAACGCTTTCCTGACAGAAAGAAATCTGTTAAGAAGGCTGAAGCTTATGGATTGTCTTCTGACTTTGCTGCTCATGATGATAAAGATGCATTAAAGACAGTTATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGCGCTGAGGACTACCAAACATTCTTGAAGTGCCTTAATATTTTTAGCAATGGAATAATTAAAAAGAATGATTTACAAAATCTGGTGACCGATTTACTTGGAAAGCATTCTGATCTCATGAGCGAATTCAATGATTTCTTAGAGCGTTGTGAAAATATTGACGGTTTCCTTGCTGGTGTCATCAGTAAAAAGCCACTAGCCGCTGATGGTCATTTATCAAGATCATCCAAGTTGGAGGACAAAGAACACAAGCGCGAGATGGATGGAGGTAAAGAGAAGGAAAGATACAAGGAGAAGTACATGGGAAAATCCATTCAAGAACTTGACCTTAGCGACTGCAAACGTTGTTCTCCGAGCTACCGGCTTCTACCTGCTGATTATCCAATTCCTACGGCCAGTCAGCGATCTGAGCTTGGTGCGCAAGTATTGAATGATCACTGGGTATCTGTGACTTCCGGAAGTGAGGATTACTCTTTCAAACATATGCGCCGGAATCAATACGAAGAAAGCTTGTTCAGATGTGAAGATGACAGGTTTGAGCTGGACATGTTATTAGAGTCTGTGAGTTCCGCTGCTAAACGAGCTGACGAGTTGTATAACAGCATTATTGAAAATAAGATGAGTGTGGAGAGTCTAAGTCGTATTGAAGATCACTTCACTGTTCTAAATCTACGGTGCATTGAACGCCTATATGGTGACCATGGTCTTGATGTCCTAGACATACTGCGTAAGAACCCAACTCATGCTCTGCCTGTAATATTGACTCGATTGAAGCAGAAACAAGAGGAGTGGAATAGGTGTCGTTCAGATTTCAATAAAGTTTGGGCTGACATTTATTCTAAAAATCACTACAAATCACTTGATCATCGTAGCTTCTATTTCAAGCAACAAGATTCAAAGAACTTGAGCACAAAATCTTTGGTGACTGAGATCAAAGAAATTAAAGAGAAGCAGCAGAAAGAGGATGACATTGTTCAGACTATTGCTGCAGGAGCTAAACATCCTCTCATTCCGCATTTCGAGTTTGACTTTTCTGATGCTGAAATTCACGAGGACCTGTATAAACTTGTTCGTTATTCATGTGAGGAAGTATTCTCAAGTAAAGAGTTATTCAATAAAGTTATGAGGCTCTGGAGTACCTTCTTGGAACCGATGCTTGGTGTAACATCCCAATCGAATGGGACAGAAAGGGCTGAGGACAGGAAAGTAGGACATAACGCTCGAAGTTCTGTTGCACCAAACGGAGGAGGTGATGGAAGCCCTAACAGAGAGTCAAATTCAAGGTTACCAAAATCTGACAAGAATGAAGTTGATGGTAGAGTAGGTGAAGTTAAAAATGGTCACCGGACTAGTGTAGCTGCCAATGATAAAGAAAATGGTTCTGTTGGTGGTGAACTTGTTAGTAAAGATGAACTTTTAATGGATAATAAAGGGCAGAAAAGTGTTGAAAGCAGTGATAAAGCCCCTGGATTTGGTAAACAGTTCTCCTCTGATGAACAAGCAGCGAGAAACTCTGCATCTATCACAATTAGAGGCGAAAGCAGTGTGCATATGTCTCCAGGCCGTGTACTTACTCCATCCCGACCTACTGATGCTGATGTCTCTGTAGCCATAGCCAAGTCTCCGAGCGCTAACGTACCTTTGGTGGAGGGATGTGACGTTACCGCTCCACCTGCAGTACCAGTGGCCAATGGCATGTTAGTTGAGAACAGTAAAGTTAAAAGTAATGAAGAATCTTCTGTGCCTTGCAAGGTTGAAAAAGAAGAGGGTGAGTTATCACCAAATGCTGACTCCGAGGAGGATAACTTTGGTGCCTATGGAGATTCAAATGCGCAGTCAGACCACAATGTTGATAGAAGGAAATATGATTCTACAAATGGAGAGGACGAACGCCACCCAGAGGCTGGAGGTGATAATGATGCTGATGACGAAGACAGCGAAAATGTTTCTGAAGCTGGTGAAGATGTGTCGGGAAGTGAATCTGCTGGTGATGAATGCTCCCGGGAGGATCATGAGGAGGAAGATATGGAACATGATGATGTTGATGGTAAAGCCGAGAGTGAAGGTGAAGCTGAGGGGATGTGTGATGCTGATGCACAAACTGGAGTAGATGGCTCATCTTTACCGTTATCAGAGAGGTTCCTGTCAACTGTGAAACCTCTCACAAAGCATGTATCAGCAGTTTCATTTGTTGAAGATGTGAAGGATTCAAGGGTGTTTTATGGAAATGATGATTTCTTTGCTCTTTTTAGGCTTCATCAAATTCTTTATGAAAGGATCTTATCTGCAAAAGAAAATTCAACAAGCGCCGAGATGAAATGGAAAACAAAAGATGCTAGTTCGACAGATCCTTACGCAAGATTTATGGATGCATTGTATAATTTGCTCGATGGATCCGCTGAGAATGCTAAGTTTGAAGATGAATGTCGAGCAATTCTCGGAAACCAGTCTTATGTGCTATTCACATTGGACAAGTTAATATATAAATTAATCAGACAGCTTCAAACTGTTGCAACCGATGAGGAAGACGCTAAGCTTCTCCAATTATACGAGTACGAAAAGTCTCGGAAACCTGGGAAATTAAATGATTCAGTATATCATTCAAATGCACATGTCATTCTTCATGAGGAGAACATATATCGTTTTCAATGTTCGTCTAGCCCCTCTCGGCTCTCGATCCAGCTCATGGACAATATGAATGAAAAGCCCGAGACTGCTGCTGTTGCTGTTGATCCAGATTTTTCATTTTATCTGCACAATGATTTTCTGTCTGTCCTCCCTGGTAAAAAGGAGCCTCATGGCATTTTACTGGAAAGAAACAAACCGAAATATGGGGACTTAGACGAGCTTTCTGCAATTTGTGCTGTAATGGAAGATGTCAAAGTAGTTAATGGATTGGAATGCAAGATATCTTGCAACTCATCCAAGATATCCTATGTTCTTGACACACAAGATTTTTTCTTCCGACCAAGAAAGAAAAGGCGAACATCATCATCATCGTCGAGTACATCATCATCTAAATCTCGCAGGGAAAGAGAGGAAAGATATCGCAAATTGATGACGTCCTCCACCTAA 4152 0.4181 MKRARDDIYSASASQFKRPFGSSRGDSYGQGPGNGGGGGGGGGGGGGGATTSQKLTTNDALSYLKEVKDMFQDQKEKYDLFLEVMKDFKAQKTDTTGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEDEAPPKKTVEFEEAISFVNKIKRRFQNDEHVYKSFLDILNMYRKEHKTITEVYSEVATLFKSHGDLLDEFTRFLPDNSSAPSTQHAPFGRNSLQRFNERGSMAPMMRQMQVDKQRYRRDRFSSHDRDMSVERPDLDDDKTMMNFHKEQRKRESRDRRIRDHDDREHDLDNSRDLNSQRFPDRKKSVKKAEAYGLSSDFAAHDDKDALKTVMYSQAFSFCEKVKEKLSSAEDYQTFLKCLNIFSNGIIKKNDLQNLVTDLLGKHSDLMSEFNDFLERCENIDGFLAGVISKKPLAADGHLSRSSKLEDKEHKREMDGGKEKERYKEKYMGKSIQELDLSDCKRCSPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKRADELYNSIIENKMSVESLSRIEDHFTVLNLRCIERLYGDHGLDVLDILRKNPTHALPVILTRLKQKQEEWNRCRSDFNKVWADIYSKNHYKSLDHRSFYFKQQDSKNLSTKSLVTEIKEIKEKQQKEDDIVQTIAAGAKHPLIPHFEFDFSDAEIHEDLYKLVRYSCEEVFSSKELFNKVMRLWSTFLEPMLGVTSQSNGTERAEDRKVGHNARSSVAPNGGGDGSPNRESNSRLPKSDKNEVDGRVGEVKNGHRTSVAANDKENGSVGGELVSKDELLMDNKGQKSVESSDKAPGFGKQFSSDEQAARNSASITIRGESSVHMSPGRVLTPSRPTDADVSVAIAKSPSANVPLVEGCDVTAPPAVPVANGMLVENSKVKSNEESSVPCKVEKEEGELSPNADSEEDNFGAYGDSNAQSDHNVDRRKYDSTNGEDERHPEAGGDNDADDEDSENVSEAGEDVSGSESAGDECSREDHEEEDMEHDDVDGKAESEGEAEGMCDADAQTGVDGSSLPLSERFLSTVKPLTKHVSAVSFVEDVKDSRVFYGNDDFFALFRLHQILYERILSAKENSTSAEMKWKTKDASSTDPYARFMDALYNLLDGSAENAKFEDECRAILGNQSYVLFTLDKLIYKLIRQLQTVATDEEDAKLLQLYEYEKSRKPGKLNDSVYHSNAHVILHEENIYRFQCSSSPSRLSIQLMDNMNEKPETAAVAVDPDFSFYLHNDFLSVLPGKKEPHGILLERNKPKYGDLDELSAICAVMEDVKVVNGLECKISCNSSKISYVLDTQDFFFRPRKKRRTSSSSSSTSSSKSRREREERYRKLMTSST* 1384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3842 1383 SUPERFAMILY PAH2 domain 342 409 IPR036600 GO:0006355
Mal6g3842 1383 Gene3D Paired amphipathic helix 59 121 IPR036600 GO:0006355
Mal6g3842 1383 ProSiteProfiles PAH domain profile. 340 409 IPR003822 GO:0006355
Mal6g3842 1383 SUPERFAMILY PAH2 domain 136 208 IPR036600 GO:0006355
Mal6g3842 1383 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1361 - -
Mal6g3842 1383 MobiDBLite consensus disorder prediction 786 804 - -
Mal6g3842 1383 SMART hdac_interact2seq4b 471 571 IPR013194 -
Mal6g3842 1383 MobiDBLite consensus disorder prediction 749 889 - -
Mal6g3842 1383 Gene3D Paired amphipathic helix 138 210 IPR036600 GO:0006355
Mal6g3842 1383 MobiDBLite consensus disorder prediction 431 452 - -
Mal6g3842 1383 MobiDBLite consensus disorder prediction 229 317 - -
Mal6g3842 1383 MobiDBLite consensus disorder prediction 1365 1383 - -
Mal6g3842 1383 ProSiteProfiles PAH domain profile. 139 209 IPR003822 GO:0006355
Mal6g3842 1383 MobiDBLite consensus disorder prediction 1026 1040 - -
Mal6g3842 1383 Pfam Sin3 family co-repressor 473 564 IPR013194 -
Mal6g3842 1383 Pfam Paired amphipathic helix repeat 362 406 IPR003822 GO:0006355
Mal6g3842 1383 Pfam Paired amphipathic helix repeat 162 206 IPR003822 GO:0006355
Mal6g3842 1383 Pfam Paired amphipathic helix repeat 76 120 IPR003822 GO:0006355
Mal6g3842 1383 MobiDBLite consensus disorder prediction 243 317 - -
Mal6g3842 1383 MobiDBLite consensus disorder prediction 972 997 - -
Mal6g3842 1383 MobiDBLite consensus disorder prediction 432 452 - -
Mal6g3842 1383 Pfam C-terminal domain of Sin3a protein 1099 1346 IPR031693 -
Mal6g3842 1383 ProSiteProfiles PAH domain profile. 53 123 IPR003822 GO:0006355
Mal6g3842 1383 Gene3D Paired amphipathic helix 338 411 IPR036600 GO:0006355
Mal6g3842 1383 SUPERFAMILY PAH2 domain 51 122 IPR036600 GO:0006355
Mal6g3842 1383 MobiDBLite consensus disorder prediction 856 873 - -
Mal6g3842 1383 PANTHER SIN3B-RELATED 1 1361 IPR039774 GO:0003714
Mal6g3842 1383 MobiDBLite consensus disorder prediction 927 1051 - -
Mal6g3842 1383 MobiDBLite consensus disorder prediction 1 53 - -
Mal6g3842 1383 MobiDBLite consensus disorder prediction 1350 1383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3842 Mal-Chr6 112085766 112094832 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3842 42 133 WRKY Transcription Factor Family AT4G12020 57.609 1.02e-22 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal6g3842 Sin3a_C 3e-55 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3842 K11644 - gmx:100807181 2122.44