Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3827 ATGGGAAGGCCTCCTTGTTGTGATAAAACCAATGTGAAAAGAGGTTTATGGACTCCTGAGGAAGATGCTAAAATACTTGCTTATGTAGCTAATCATGGAATTGGAAATTGGACAACTGTTCCAAAGAAAGCAGGGTTGAATAGGTGTGGTAAGAGTTGCAGGCTAAGATATACTAATTATCTAAGACCTGATCTCAAGCATGATAGTTTTACACCTCAAGAAGAAGAACTCATTATTACCCTTCATGGAGCTATAGGAAGCAGATGGTCTTTAATTGCAAAAAGACTACCTGGAAGAACAGACAATGATGTCAAGAATTATTGGAACACAAAACTAAGAAAGAAGCTTATTAAAATGGGAATTGATCCAGTAACTCATAAGCCAGTTTCACAAGTCATTTCTGACTTAGGAAGCATTAGTAGCCTCACAACCACAAACTCTCAAAACCAAATGAATTGTGTCAATAATAACACAATTTTGGAACACACAAAAGAGGAACAAGTTCAACCATTTGAAAATCATCAAGTTCAATATCACCAATTCACAAGCCAAGAGAATAATTTCCAACAACATTTGTTAAGTGAAGTTGCATCTTCAAGTTCATCTTCATCTTCCTCTAATCTCACTAGGTTAAGCTCGCCGATTTCGTACTCTTGCAACACTTCACAAGCTCAAATTAATTCTAACTTTGATTGGAGTGATTTTCTTCACAATGATGAGCCTTTTGTATGGTCAGAGATTCAACAGCTTCAACAATGTGATATACAAAGGGTAATGTCATCATTGAGCCTCTCAGGTATAATGCAAAGTGAAGGTGAAATTTCTAATAATTTCAATAGTAATGGAGATGATAAACAAGGTGGTTCAAGTGAAGGTTTTGAGGATGTTGCTTGTGTTGCAAGCAAAGAATATCAAGTTGATAAGAAATGTGAAGGAAATTCATTTTCAGGGAATTCATTTGTGGATGGTATTTTGGACAAGGACAGTGAGATAAGGGCAACATTTCCAGAAATTTTGGATGCTTCTTTTGATTATTAG 1038 0.3574 MGRPPCCDKTNVKRGLWTPEEDAKILAYVANHGIGNWTTVPKKAGLNRCGKSCRLRYTNYLRPDLKHDSFTPQEEELIITLHGAIGSRWSLIAKRLPGRTDNDVKNYWNTKLRKKLIKMGIDPVTHKPVSQVISDLGSISSLTTTNSQNQMNCVNNNTILEHTKEEQVQPFENHQVQYHQFTSQENNFQQHLLSEVASSSSSSSSSNLTRLSSPISYSCNTSQAQINSNFDWSDFLHNDEPFVWSEIQQLQQCDIQRVMSSLSLSGIMQSEGEISNNFNSNGDDKQGGSSEGFEDVACVASKEYQVDKKCEGNSFSGNSFVDGILDKDSEIRATFPEILDASFDY* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3827 345 CDD SANT 69 112 IPR001005 -
Mal6g3827 345 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mal6g3827 345 CDD SANT 17 61 IPR001005 -
Mal6g3827 345 PANTHER F14D16.11-RELATED 1 345 - -
Mal6g3827 345 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mal6g3827 345 Gene3D - 7 67 - -
Mal6g3827 345 PANTHER F14D16.11-RELATED 1 345 - -
Mal6g3827 345 Gene3D - 69 132 - -
Mal6g3827 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Mal6g3827 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Mal6g3827 345 SMART sant 66 114 IPR001005 -
Mal6g3827 345 SMART sant 13 63 IPR001005 -
Mal6g3827 345 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mal6g3827 345 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mal6g3827 345 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3827 Mal-Chr6 111553599 111556024 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3827 1 345 MYB Transcription Factor Family AT3G28470 46.649 3.33e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal6g3827 Myb_DNA-binding 2.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3827 K09422 - gmx:100811448 436.032