Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3806 ATGAAAGAAACCAAGGCTTGTGCCGCATGCACATATCAAAGAAAAAAGTGTACCAGTGAATGTGTGTTAGCTCGTTATTTTCCGGCTGATAAACCAACAATGTTTCGCGACGCTCATCGTTTGTTTGGTGTTTCTAACATACAGAAGATACTAAAGAAAATCAAGGACGATTATAAAAGAGATGATGCAATGAAATCAATTATTTTTGAGTCGGATATTCATGCAAAATTTCCAAGTCAAGGATGTCTTGGTGTTATTAAGCAATATGAAAGTTTGATAAAGGAGGTTTTTGAAGAGTTAAATCAAACAAATAGGCTATTAGCTTATTGTAAGCTAAACAACCTACAACAACAAAATCATCATTCCTCCCTAGCTTCTACTAGTTCTCAAATTCCAATGTTCAACAATTATGGTGATGTTCCTAATTATTATCACAATAGTGAAAATAATAATATGATGATGGCATCTTCTTCTTATGTAACTGACATTATTCCGGTGTTAATAATACTCTTATTGACACAAATTCGAATATAA 534 0.3258 MKETKACAACTYQRKKCTSECVLARYFPADKPTMFRDAHRLFGVSNIQKILKKIKDDYKRDDAMKSIIFESDIHAKFPSQGCLGVIKQYESLIKEVFEELNQTNRLLAYCKLNNLQQQNHHSSLASTSSQIPMFNNYGDVPNYYHNSENNNMMMASSSYVTDIIPVLIILLLTQIRI* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3806 177 ProSiteProfiles LOB domain profile. 5 107 IPR004883 -
Mal6g3806 177 Coils Coil 86 106 - -
Mal6g3806 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 152 - -
Mal6g3806 177 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Mal6g3806 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 27-RELATED 4 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3806 Mal-Chr6 110916080 110916613 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3806 4 107 AS2 family AT3G47870 49.038 2.48e-30 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mal6g3806 LOB 6.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3806 - - mtr:MTR_6g011200 202.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g3806 6 110916080 110916613 Mal6g3806 6 110916080 110916613 ECH