Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3792 ATGGGAAAAATAATGGTAGAAAGTTCTACTAAGATTGCTTTTATTCTCTTGGTTACTTTCACCATTACTATTCCATGCCTTGAGGCTGGGATTGGTGAGTTTGATGATTTTCTCAAAGCTCAAGCTGATGCAGCCCATAAACTTGCTCTTGATGCATATGTTCCAATTCCTGAACAAATTGCACATGACCTCAATGTCCATGTTCATTTATCAATGGAAGCAGCAGATAACAACACAAGAAGGGAATTGAGGCAAAAAGGTAAAGGACATGAAGAAGGACCATGTGAAGCAACCAACCCAATTGATAGTTGTTGGAGGTGCAAAGCAGATTGGGCTACAAATCGATTTCAATTAGCAAAATGTAGTAAGGGCTTTGGAAGAAGGGCTACTGGTGGGCTTGGAGGCCCAATCTATGTTGTAACTGATGAGTCTGATAATGACATGGTAAGCCCAAAACCTGGTACCCTTAGATTTGGTTGCGTCCAAAAGGGTCCATTATGGATCATTTTTGAACGTAGCATGATCATTAGATTGAACCAAGAATTGATGGTTTCTTCTGACAAAACAATTGATGGTCGTGGAGTTAATGTTCAAATTAGAGATGGTGCTGGAATTACAATGCAATTTGTTAATAATGTTATCATTCATGGACTTCATATTCAAGATATTAAAGCTAAACCAGGGGGTTTGATTAGAGATTCTTTTGATCATGTTGGACAAAGAACAAGAAGTGATGGTGATGCTATCTCTATTTTTGGATCTTCCAATATTTGGATTGATCATCTTTCACTCTCTGAATGTGAGGATGGTCTTGTTGATGTTATCCAAGGTTCTACTGGTATCACAATCTCAAATTGTCACATGACAAAACATAATGATGTTATGTTATTTGGAGCTAGTGATACATACACTGGTGACAAGCTTATGCAAATAACAGTAGCATTCAACCACTTTGGTCAAGGATTGATTCAAAGAATGCCTAGGTGCAGATATGGTTTTGTCCATGTTTTGAACAATGACTATACTCATTGGATAATGTATGCAATTGGTGGTAGCTCAGCACCAACAATTCTTAGCCAAGGAAATCGTTTCATTGCTCCAGATAATAATGCTGCAAAGGAAATCACACATAGAGATTATGCTGGACCAGAAGTTTGGAAGAATTGGCAATGGAGTTCAGAATTGGATGTATTCATGAATGGTGCTAAATTTGTTTCATCTGGTTCACCTATTAATAAGGCACCATTCAAAAAAGGGTTTATGATGAAACCAAGAGATGGATCTCATGCTAGTAGACTAACAAAGCATTCTGGTGCCCTAAATTGTGTTGTAGGAAGGCCTTGTTAG 1347 0.3794 MGKIMVESSTKIAFILLVTFTITIPCLEAGIGEFDDFLKAQADAAHKLALDAYVPIPEQIAHDLNVHVHLSMEAADNNTRRELRQKGKGHEEGPCEATNPIDSCWRCKADWATNRFQLAKCSKGFGRRATGGLGGPIYVVTDESDNDMVSPKPGTLRFGCVQKGPLWIIFERSMIIRLNQELMVSSDKTIDGRGVNVQIRDGAGITMQFVNNVIIHGLHIQDIKAKPGGLIRDSFDHVGQRTRSDGDAISIFGSSNIWIDHLSLSECEDGLVDVIQGSTGITISNCHMTKHNDVMLFGASDTYTGDKLMQITVAFNHFGQGLIQRMPRCRYGFVHVLNNDYTHWIMYAIGGSSAPTILSQGNRFIAPDNNAAKEITHRDYAGPEVWKNWQWSSELDVFMNGAKFVSSGSPINKAPFKKGFMMKPRDGSHASRLTKHSGALNCVVGRPC* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3792 448 PANTHER PECTATE LYASE 9 448 - -
Mal6g3792 448 Pfam Pectate lyase 181 364 IPR002022 -
Mal6g3792 448 SMART amb_all 173 370 IPR002022 -
Mal6g3792 448 SUPERFAMILY Pectin lyase-like 99 439 IPR011050 -
Mal6g3792 448 Pfam Pectate lyase, N terminus 31 83 IPR007524 GO:0030570
Mal6g3792 448 Gene3D - 98 441 IPR012334 -
Mal6g3792 448 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Mal6g3792 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Mal6g3792 448 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Mal6g3792 448 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Mal6g3792 448 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Mal6g3792 448 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Mal6g3792 448 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Mal6g3792 448 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Mal6g3792 448 PANTHER PECTATE LYASE 18-RELATED 9 448 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3792 Mal-Chr6 110564893 110567294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3792 16 448 Polysaccharide Lyase AT5G15110 55.388 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3792 K01728 - gmx:100810615 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g3792 6 110564893 110567294 Mal5g4216 5 113015616 113017522 ECH
Mal6g3792 6 110564893 110567294 Mal6g3792 6 110564893 110567294 ECH
Mal3g0112 3 4169621 4172294 Mal6g3792 6 110564893 110567294 ECH