Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3790 ATGCTTGCCAAGGGTTTTCATATTGGTAGGGATCTTATACCGCGAAAGAGATGTTTTGATGAGTTAAGCTATCTCAGCTACGGACAACCACGTCAAAATCCAAGAGCTCTAATTGATGCCTATGGCAGTAAGGATAAGGTTATGACAACATCATGGCAGAATACTGAAGAGGACGAGTTCGATTGGGAAGATATGAGTCGGACACTAGTAGACCATAGTAGAAGTAATGGTTTCCTGCAACCAACTGTTGGTTTCTCATCAGAAAAGCCTGTTACTGTTGCAGCAAGTCCAACTATTGAGTACCGTCCACCAGTTTTTCCAGCAACTTTTGAAATGAGGCACTCCATAAATGTGCATGCTCCACGTCCTCCCAGCACAACTCCTATATTTCCATCGAAGAATCCTGTTAGGAATCCATTCGAATCAATAAATGCTAATAGTACCATTGTGAGTCATGGTCTAATTAATAGACCGTTTCCTGTGCATGAACATGGTGTTGAGAACAATGATATCAGTAAAAGAAACCTGCATCAGTTGCCTAATCAGCTACCTGGTCTGATTTCATCTAACACGCATAACAGTGTACAAACACCGCCATTCCAGTTTTTTCCATCTCAGGATCCAGCAGCGTCGCAATTTACTTATAGGACCTCTTTGCCAGGACATGTTGCTGCTATGATTAACCCCCCGCCAATTCCACAACCTGTTACGCCACTTCCTCTGCCAGGCCAAAGAATCGGAAACAACTCTTTTCATTTCCAGCGGGGAGTTTTGCGACCTTTACCTCCAGCTGGCCCACATGCTCTACCCCATATTCTACCTCATCCCGTTCCTGGTCCTTTTGTGTCAAGCCAACAGCCAACTGTTGGATATTCTAATTTGATTAGTTCACTCTTGGGCCAAGGTGTAATCTCATTGACTAATCAAGCCCCTGTGCAGGATGTTGTCGGCATTGAGTTTGATCTAAATATTCTGAAGGTTCGTCATGAGTCTGCAATCAGTGCCTTATATGGTGATCTTCCTAGACAGTGCACAACTTGTGGCCTCCGATTCAAATCCCAAGATGAGCACAGCAGTCACATGGATTGGCATGTGACTAAGAACCGCATGTCTAAAAACCGTAAGCAAAAGCCCTCTCGCAAGTGGTTCGTGAGTGAGACGATGTGGCTTAAATGTGCAGAGGCAATCGGAGCCAAATCAGCTCCAGGTTTTTTGCCAACCGAGACCACTGAGGAAAAGAAAGACGATGAAGAGGTTGCAGTTCCGGCTGACGAGAACCAAACTACATGTGCATTATGTGGAGAACATTTTGACGAGTTTTACAGCGATGAAACGGATGAGTGGATGTATAGAGGAGCTGTATACCTTAATCAGCAGTTAGGCCCCATTGTTCATGATAAATGTAAATCTTAA 1413 0.4423 MLAKGFHIGRDLIPRKRCFDELSYLSYGQPRQNPRALIDAYGSKDKVMTTSWQNTEEDEFDWEDMSRTLVDHSRSNGFLQPTVGFSSEKPVTVAASPTIEYRPPVFPATFEMRHSINVHAPRPPSTTPIFPSKNPVRNPFESINANSTIVSHGLINRPFPVHEHGVENNDISKRNLHQLPNQLPGLISSNTHNSVQTPPFQFFPSQDPAASQFTYRTSLPGHVAAMINPPPIPQPVTPLPLPGQRIGNNSFHFQRGVLRPLPPAGPHALPHILPHPVPGPFVSSQQPTVGYSNLISSLLGQGVISLTNQAPVQDVVGIEFDLNILKVRHESAISALYGDLPRQCTTCGLRFKSQDEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSETMWLKCAEAIGAKSAPGFLPTETTEEKKDDEEVAVPADENQTTCALCGEHFDEFYSDETDEWMYRGAVYLNQQLGPIVHDKCKS* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3790 470 ProSitePatterns Zinc finger C2H2 type domain signature. 344 364 IPR013087 -
Mal6g3790 470 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 5 470 - -
Mal6g3790 470 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 5 470 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Mal6g3790 470 MobiDBLite consensus disorder prediction 402 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3790 Mal-Chr6 110468322 110469831 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3790 25 469 C2H2 Transcription Factor Family AT4G04885 42.600 1.76e-103 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal6g3790 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3790 K14400 - gmx:100794796 454.907