Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3789 ATGAGCAACAATGAGATTGGGCAAAAACCTCCACCATCAATACTCGTGGGTCGATTCAAGGCTTTGTTGAATCAACGTCGTGAAGAGGATCCTAGGCTGAGAAATTCGCAACCTTCAACCGAAGAAATTGTTCAGATTTACGAGATTTTGTTATCTGAACTCACGTGTAATGTTAAACCTATCATCACTGATCTTACCATCATTGCTGAACAACATCGTGATCATGCTAAAGGAATCGCTTTTGCTATTTGCTCTCGTATTCGTGAGGTGTCTGCAGATCAAAAGCTTCCTTCACTCTATCTCTTGGACAGTATTGTGAAGAATGTTGGCCAGGAATATGTTCGATACTTCTCAGTACATCTACCCGAAGTTTTCTGCGAGGCATACAAACAAGTTAATTCAAGTTTGCATTCTGCTATGCGACATCTCTTTGGTACCTGGTCAAAAGTGTTCCCTCCCTCTGTTTTACGGAAGATTGATGTGCAATTGCAATTTTCTCAAGCAGCTAATAATCAACCATCTAGTGTTAATCCCCTCAGGGCTTCTGAATCTCCTCGACCAACTCATGGGATACATGTTAATCCAAAATACATAAGACAAATAGAACACTCTACTTCAGTTATGGATAGTGTTGCAGCTGAAAGGTTAGACTCAACAGGAACTGTTGGAAATGCAAATTTTGGTCTTGTAGCTAGTAAGATTAATCAATTTGTCCCAAGTAGGGTTGGAAGATCCTCGTCACCACCAAGAATTGGACTTGACAGGCATATGCCCTCATATATGGATGAATATGTAGCTGACAATTCTACTGGTAGAACAGTTGAGAGAGAATCTCCTCATCGTGCTGTTGATTATGGACTAGTTAAAGGATTAGGTAGAGAAGAAGAGTTGAGTGAGTGGCCGCGAAAGCAGTTTTCTGGTGATGGTCGGAAGAGATTTCAAACTTCTATGACATACAGTCTCAGCAACGGACAACCGCGTCAAAATCCAAGAGCTCTAATTGATGCCTATGGTAGTGACAAAAGCCAAGAAACTTCTGGTAGTAAGCCTTTGTTAGTGGAACGACTGGATAGAAATGGTATGGATAAGGTTATGACAACATCATGGCAGAATACTGAAGAGGAGGAGTTTGATTGGGAAGATATGAGTCCGACACTAGTAGACCATAGTAGAAGTAATGGTTTCCTGCAACCAACTATTGGTTTCTCATCAGAAAAGCCTGTTACTGTAGCAGCCAGTGCAACTTCTTCAGTGTCAAGGGTGTTTCCTGGTCTCAATTCTAATATTGAGTACCGTCCACCAGTTTTGCCAGCAACTTTTGAAACGAGGCACTCGATAAATGTGCATGCTCCGCGTGCTCCCAGCATAACTCCTTTATTTCCATCGAAGAATCCTGTTAGGAATCCATTCGAATTATTAAATGCTAATAGTACCATTGTGAGTCATGGTCTACTTAATAGACCTTTTCCTGTGCATGAACATGGTGTTGAGAACAATGATATCATTAAAAGAAACCTGCATCAGTTGCCTAATCAGCTACCTGGTCTGATTTCATCTAACCCGCCTAACAGTGGACAAACACCGCCATTCCAGTTTTTTCCATCTCAGGATCCAGCAGCGCCGCAATTTACTTATAGGACCTCTTTGCCAGGACATGGTCCTGCTATGAGTAACCCCCTGCCAAATGTACGACCTGTTTTGCCACTCCCTTTGCCAGGCCAAAGAATCGGAAACAACTCTTTTCATTTCCAGGGGGGAGCTTTGCGACCTTTACCTCCAGCTGGGCCACATGCTCTACCCCAGATTCTACCTCATCCCAATCCTGGTCCTTTTGTGTCAAGCCAACAGCCAACTGTTGGATATTCTAATTTGATTAGTTCACTCATGGCCCAAGGTGTAATCTCATTGGCTAATCAAGCCCCTGCGCAGGATTCTGTGGGAATTAATTTTGATCCAGATATTCTAAAGGTTCGTCATGAATCTGCAGTCAGTGCATTATATGGTGATCTTCCTAGACAGTGCACAACTTGTGGCCTCCGATTCAAATCCCAAGATGAGCACAGCAGTCACATGGATTGGCATGTGACTAAGAACCGCATGTCTAAAAACCGTAAGCAGAAGCCCTCTCGCAAGTGGTTTGTGAGTGAGACGATGTGGCTTAGTGGTGCAGAGGCATTGGGAGCCGAATCAGCTCCAGGTTTTTTGCCAACCGAGACCACCGAAGAAAAGAAAGAAGATGAAGAGTTGGCAGTTCCTGCTGACGAGGACCAAAATACGTGTGCATTATGTGGAGAACCTTTTGACGAGTTTTACAGTGATGAAACGGAGGAGTGGATGTATAGAGGAGCTGTATACCTTAATGCGCCTAATGGAATAACAACCAGCATGGATAGGTCGCAGTTGGGCTCCATCATTCATGCTAAATGCCGATCTGAATCTACCCCATCTGAAAATTTTGTGATGGATGAAGGGGGCACCTATGAAGAAGGCGGTCAAAGAAAACGAATGCGGAGCTGA 2517 0.4354 MSNNEIGQKPPPSILVGRFKALLNQRREEDPRLRNSQPSTEEIVQIYEILLSELTCNVKPIITDLTIIAEQHRDHAKGIAFAICSRIREVSADQKLPSLYLLDSIVKNVGQEYVRYFSVHLPEVFCEAYKQVNSSLHSAMRHLFGTWSKVFPPSVLRKIDVQLQFSQAANNQPSSVNPLRASESPRPTHGIHVNPKYIRQIEHSTSVMDSVAAERLDSTGTVGNANFGLVASKINQFVPSRVGRSSSPPRIGLDRHMPSYMDEYVADNSTGRTVERESPHRAVDYGLVKGLGREEELSEWPRKQFSGDGRKRFQTSMTYSLSNGQPRQNPRALIDAYGSDKSQETSGSKPLLVERLDRNGMDKVMTTSWQNTEEEEFDWEDMSPTLVDHSRSNGFLQPTIGFSSEKPVTVAASATSSVSRVFPGLNSNIEYRPPVLPATFETRHSINVHAPRAPSITPLFPSKNPVRNPFELLNANSTIVSHGLLNRPFPVHEHGVENNDIIKRNLHQLPNQLPGLISSNPPNSGQTPPFQFFPSQDPAAPQFTYRTSLPGHGPAMSNPLPNVRPVLPLPLPGQRIGNNSFHFQGGALRPLPPAGPHALPQILPHPNPGPFVSSQQPTVGYSNLISSLMAQGVISLANQAPAQDSVGINFDPDILKVRHESAVSALYGDLPRQCTTCGLRFKSQDEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSETMWLSGAEALGAESAPGFLPTETTEEKKEDEELAVPADEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPNGITTSMDRSQLGSIIHAKCRSESTPSENFVMDEGGTYEEGGQRKRMRS* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3789 838 ProSitePatterns Zinc finger C2H2 type domain signature. 674 694 IPR013087 -
Mal6g3789 838 SMART 558neu5 42 164 IPR006569 -
Mal6g3789 838 MobiDBLite consensus disorder prediction 337 359 - -
Mal6g3789 838 MobiDBLite consensus disorder prediction 813 838 - -
Mal6g3789 838 MobiDBLite consensus disorder prediction 172 191 - -
Mal6g3789 838 CDD CID_Pcf11 47 164 - -
Mal6g3789 838 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 13 814 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Mal6g3789 838 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 13 814 - -
Mal6g3789 838 Pfam CID domain 57 158 IPR006569 -
Mal6g3789 838 Gene3D - 32 164 IPR008942 -
Mal6g3789 838 ProSiteProfiles CID domain profile. 39 167 IPR006569 -
Mal6g3789 838 SUPERFAMILY ENTH/VHS domain 38 165 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3789 Mal-Chr6 110412541 110417857 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3789 15 838 C2H2 Transcription Factor Family AT4G04885 46.362 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal6g3789 CID 1.8e-12 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3789 K14400 - gmx:100794796 825.083