Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3779 ATGGCTTTTCCACCTTCTCACACTTTCATCTTTCAAACTCATGAAGATCATCATCATCATGAAAACCTACTTACATCTTCAACTTCTCTCAACTCCTACCCTTCTTTTCCACCTCATCAACACTTTCAAGGTAGTGGAAGTAATGGTGGTGCATCTTTCATGATGAAGAGATCCATGTCATTTTCAGGCATAGAGAACAATCATATCAACAACAATAAGTGTGATGAATTAGTGCATGGAGATGAAGATCAATTATCAGATGAAGAAGGGTACTCACAAATGGGTGAAAAGAAGAAGAGGTTGAGTTTGGAACAAGTGAAGGCACTTGAGAAGAGTTTTGAGATTGGAAACAAACTTGAACCTGAGAGGAAAATTCAGTTGGCTAAAGCTTTGGGGTTACAACCTAGACAAGTAGCTATATGGTTCCAAAATAGAAGAGCAAGGTGGAAAACTAAGCAACTTGAGAAAGAATATGAAGTTCTTAAGAAGCAATTTGATTCTCTTAAGGCTGATAATGATACACTTAAGGCTCAAAACCACAAATTACATGCAGAGCTACAAACTCTAAAGAAAAGGGATTGCTTTGAAAATGGAACAATTTGCCTCAAAAAAGAAAATGAAGGCTCTTGGAGTAATGGAAGTGATAACAGCTCAGATATGAATCTAGACCTTTCTAGAACACCAATGATGAACAGTCCTGTATCTTCACAGAATAGAAAAAGTCTTCTACCAAATTCCCTTAAGCCTACAAGCATAACACAGCTCCTTCAATGCTCTTCAAGATCAGATCTTCAAGATGAAAGCTTTTGCAACATGTTTCACAATATTGATGAGCAGCAGAGTTTATGGCCTTGGACTGATCATCAGCAACACCATTTCCATTAA 885 0.374 MAFPPSHTFIFQTHEDHHHHENLLTSSTSLNSYPSFPPHQHFQGSGSNGGASFMMKRSMSFSGIENNHINNNKCDELVHGDEDQLSDEEGYSQMGEKKKRLSLEQVKALEKSFEIGNKLEPERKIQLAKALGLQPRQVAIWFQNRRARWKTKQLEKEYEVLKKQFDSLKADNDTLKAQNHKLHAELQTLKKRDCFENGTICLKKENEGSWSNGSDNSSDMNLDLSRTPMMNSPVSSQNRKSLLPNSLKPTSITQLLQCSSRSDLQDESFCNMFHNIDEQQSLWPWTDHQQHHFH* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3779 294 MobiDBLite consensus disorder prediction 206 245 - -
Mal6g3779 294 ProSitePatterns 'Homeobox' domain signature. 127 150 IPR017970 GO:0000981|GO:0006355
Mal6g3779 294 Coils Coil 144 192 - -
Mal6g3779 294 PRINTS Lambda-repressor HTH signature 132 148 IPR000047 GO:0003677
Mal6g3779 294 PRINTS Lambda-repressor HTH signature 123 132 IPR000047 GO:0003677
Mal6g3779 294 Pfam Homeodomain 97 150 IPR001356 GO:0003677
Mal6g3779 294 Pfam Homeobox associated leucine zipper 152 191 IPR003106 GO:0006355|GO:0043565
Mal6g3779 294 MobiDBLite consensus disorder prediction 30 50 - -
Mal6g3779 294 Gene3D - 89 166 - -
Mal6g3779 294 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 294 IPR045224 GO:0003700
Mal6g3779 294 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 294 - -
Mal6g3779 294 SUPERFAMILY Homeodomain-like 89 154 IPR009057 -
Mal6g3779 294 SMART HOX_1 95 156 IPR001356 GO:0003677
Mal6g3779 294 CDD homeodomain 97 153 IPR001356 GO:0003677
Mal6g3779 294 ProSiteProfiles 'Homeobox' domain profile. 92 152 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3779 Mal-Chr6 110215953 110218679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3779 1 287 Homeobox Transcription Factor Family AT5G15150 50.955 6.79e-83 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mal6g3779 Homeodomain 4.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3779 K09338 - gmx:100790803 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g3779 6 110215953 110218679 Mal6g3779 6 110215953 110218679 ECH
Mal6g3779 6 110215953 110218679 Mal3g0153 3 5581259 5584025 PCT