Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3775 ATGTCTAGCAGAAGGTCAAGGCAACAATCTTCTTCTTCAAGAATTTCTGATGACCAAATCATCGAACTTGTTTCCAAGTTGCGTCAACTTGTTCCTGAGATTCGTCATAGGCGTTCGGACAAGGTATCAGCATCTAAGGTCCTACAAGAGACTTGTAACTACATAAGAAACTTACACAGAGAAGTTGATGATTTAAGTGAAAGATTGTCTCAGTTATTGGTCACAATTGATGCTGATAGTCCAGAGGCTAATATTATAAGAAGCCTGATTAATCAATAA 279 0.3763 MSSRRSRQQSSSSRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLVTIDADSPEANIIRSLINQ* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3775 92 Coils Coil 55 75 - -
Mal6g3775 92 CDD bHLH_AtPRE_like 15 73 - -
Mal6g3775 92 PANTHER TRANSCRIPTION REGULATOR 1 90 - -
Mal6g3775 92 Pfam Helix-loop-helix DNA-binding domain 22 58 IPR011598 GO:0046983
Mal6g3775 92 Gene3D - 2 85 IPR036638 GO:0046983
Mal6g3775 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Mal6g3775 92 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Mal6g3775 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3775 Mal-Chr6 110134934 110137289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3775 12 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 75.000 6.05e-37 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal6g3775 HLH 7.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3775 - - gmx:100794486 141.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g3775 6 110134934 110137289 Mal2g4866 2 110108572 110110040 ECH
Mal6g3775 6 110134934 110137289 Mal6g3775 6 110134934 110137289 ECH
Mal3g0159 3 5831458 5834225 Mal6g3775 6 110134934 110137289 ECH
Mal6g1937 6 41835096 41836050 Mal6g3775 6 110134934 110137289 ECH
Mal5g2530 5 72365390 72366736 Mal6g3775 6 110134934 110137289 ECH