Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3653 ATGGATAGGTTTTTCATCATCATCAAAGAGGTTGCCCATGCTGCTATTTCTTTGTCCTCACACTGCCGCTGGTGTCTCACTGGAACACCGCTTCAGAATAGCTTGGAAGATCTATTCAGTCTCTTGTCTTTCTTGCGTGTTGAACCTTGGTGTAACTCTCAATGGTGGACTAAGTTGATTCAAAAGCCATTTGAGAATGGAGATCAAAGAGCCCTGAAATTGGTCAAGGGAATTTTGAGGACATTGATTTTAAGAAGAACCAAGGAAACAAAGGATAAAGAAGCCATATGGGAGGAGCTTCAAAGTGCAGTTCATGCCGCTGATCAGATGACAACCATAACTCATGCTGAAGCAGCCGAGAAATGA 366 0.429 MDRFFIIIKEVAHAAISLSSHCRWCLTGTPLQNSLEDLFSLLSFLRVEPWCNSQWWTKLIQKPFENGDQRALKLVKGILRTLILRRTKETKDKEAIWEELQSAVHAADQMTTITHAEAAEK* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3653 121 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 11 95 - -
Mal6g3653 121 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 90 IPR027417 -
Mal6g3653 121 Pfam SNF2-related domain 11 90 IPR000330 GO:0005524|GO:0140658
Mal6g3653 121 Gene3D - 8 87 IPR038718 -
Mal6g3653 121 PANTHER DNA REPAIR PROTEIN RAD5B 11 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3653 Mal-Chr6 106860620 106862356 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3653 10 95 RAD5 or RAD16-like Gene Family AT5G43530 74.419 5.20e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal6g3653 SNF2_N 6.9e-24 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3653 K15505 - csin:114274303 140.969