Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3607 ATGATTAATGGACTTTGTAAAGAAGAGTTGTTTGATGAAGCATTGTCTTTACTGTCTAAAATGGAAGACACTAATTGCACCCCTGATGTTGTAACTTATGAAACCCTTGTTTATGCTTTGTTCAATAAGGACAAGAATGATAAGGCACTGAAACTTCTTCCTGAAATGGTTACTAGAGAAATGCTTAGTGGCAAGCCATTGTTTCTTGGGCAAAACGTGGTGCACCAGTTTGATCTCATGACTGATTTGCTTGGTACTCCTCCTGCTAAATCAATTTCGAGGGTTAGTTTATCAAAATCTAGTGTGTAG 309 0.3754 MINGLCKEELFDEALSLLSKMEDTNCTPDVVTYETLVYALFNKDKNDKALKLLPEMVTREMLSGKPLFLGQNVVHQFDLMTDLLGTPPAKSISRVSLSKSSV* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3607 102 Pfam PPR repeat family 1 41 IPR002885 -
Mal6g3607 102 PANTHER (PPR) REPEAT PROTEIN, PUTATIVE-RELATED 1 70 - -
Mal6g3607 102 PANTHER ATPASE EXPRESSION PROTEIN 3 1 70 - -
Mal6g3607 102 Gene3D Transferase(Phosphotransferase) domain 1 59 97 - -
Mal6g3607 102 Gene3D Tetratricopeptide repeat domain 1 58 IPR011990 GO:0005515
Mal6g3607 102 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1 28 IPR002885 -
Mal6g3607 102 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 29 63 IPR002885 -
Mal6g3607 102 TIGRFAM PPR: pentatricopeptide repeat domain 1 30 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3607 Mal-Chr6 105639049 105639992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3607 60 100 MAP Kinase Gene Family AT1G18150 70.732 4.75e-14 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3607 - - mtr:MTR_6g079460 85.5001