Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3603 ATGGCAACAAAAGGAGTGAAAAGGGTTGATGCCGTTGATTCTCGATCCGCTTCTATTCTCGCTCGTGCCAAAGATGGCAATTCTCAAGTAGTGGAGCAAGCTGATGAAGTGAAGAAACCTGAGAGGAAGAAGCCTAATTCGAAAGAACCAAATGCGAAAAGGGTTAAGGTTGGGAAATGGAAAAAGGTTAAGGATCCTAATGCGCTGAAGCGTCCTCTTACTGCTTTCTTTGTCTTTATGGATGATTTTAGAAAGACTTTTAAGGAAGCTAACCCTGATTCCAAGGATGTTAAAAGGGTTGGTAAGGAAGTTGGTGAGAAGTGGAGGTCTTTGACTGATGAAGAGAAGAAGCCTTATTTGGATAGAGTTGTTGAACTGAAGGCAGAGTATCAGAAGGCCTATAATTTTGCTGCTGAAAATGAACAATACCCAGCAATTTGTGCAATCCAGATGAAGAATCGTTCTTCCCTCAATGGAAAAGTGATAAGGGTCATTTGGTCTAGTCGTGATGTTGATGTAATGAAAAGTGCCAGAGGAAATGTGTTTGTTAAGGTAAGTTATGCAGTCTATAGCTTTGATGTGAAATGCTTAAATGATGACATTCTGAATCAGTCTTATCTATTAAGTGAATTCTAA 636 0.3962 MATKGVKRVDAVDSRSASILARAKDGNSQVVEQADEVKKPERKKPNSKEPNAKRVKVGKWKKVKDPNALKRPLTAFFVFMDDFRKTFKEANPDSKDVKRVGKEVGEKWRSLTDEEKKPYLDRVVELKAEYQKAYNFAAENEQYPAICAIQMKNRSSLNGKVIRVIWSSRDVDVMKSARGNVFVKVSYAVYSFDVKCLNDDILNQSYLLSEF* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3603 211 MobiDBLite consensus disorder prediction 1 56 - -
Mal6g3603 211 Gene3D High mobility group box domain 53 136 IPR036910 -
Mal6g3603 211 SUPERFAMILY HMG-box 55 134 IPR036910 -
Mal6g3603 211 Pfam HMG (high mobility group) box 70 134 IPR009071 -
Mal6g3603 211 CDD HMGB-UBF_HMG-box 70 133 - -
Mal6g3603 211 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 9 140 - -
Mal6g3603 211 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 69 137 IPR009071 -
Mal6g3603 211 MobiDBLite consensus disorder prediction 29 56 - -
Mal6g3603 211 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 9 140 - -
Mal6g3603 211 SMART hmgende2 68 139 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3603 Mal-Chr6 105553310 105555620 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3603 133 184 Eukaryotic Initiation Factors Gene Family AT2G36660 48.077 7.86e-07 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Mal6g3603 HMG_box 5.6e-20 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3603 K25507 - gmx:100306558 190.66