Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3597 ATGGATCCAAAAGCATGTGATAAATCAATGAAAGATTCTTCAGATTTCAACCGTGCAAAGATTCTCCATGCAATTGATAAATCAATTGCATGTCCAACTCCAGAGAAGAAGACTGAACCATCATTAGCCACCAATTTCAAAGATCCACAAACCCAGCTTCCTGAAAAGTACATGGTCATTGCTGATTTGTTTAGTGATATGAGTTGTGCACTTAGATTGTTGCATCTGCGTAAAAAGTCTCCAACTTTTCAAAATATTTGCAAGAAAGTTGAAGTTCTTGCTAAGAGAAACTTCTCTTATGCTCATCTAGCGCAGATGAAGTATATACTTCCCAAAGGTATAGAGATTGAAAAGGTGGTTGTTGTTGATAAGAAGAGCTTGTGTATGAAGCCGGATTTGAAGATCACCTTGGTATTTGAAGTTGTAGAAGATCACTCTGAACAGTCTGCTGATTTGTCTCTTATACGATATTTTAATTCCAGGCTGATTAATTTCTTTAATCTGCATCCTGAGGGGACTGATGTTCCAGAGGCCGCACTACCAGAGCCCTTTAGCCAAAGACCTTATAACTTGGTTTTCAAAGATGGACCTTTAAATTTGTCAACAGAATTTTCATCAACTTCCAATGAAATTGAACTGTCGCTGAACAACTTACATCTGAGTCCATCTTTTAAAAGACACTTTTCTCAGAAGAATGTTGCTAACGAGACTGAGCAAGTTCAGAGTTTTTCATCGTCTGAAAACTCTCTGTCATCCCATGAATCTGACTGCCTGGATAACCAAGAAAGTGAAAGCACATGGCAGAAAGAACCTACACCATTGTTTGATCGTGTGAGTAATTTTAACGCAGAAAGAGGCAAGCAGAAGGAATCATTGTCTATGTGTATTGAGCCAAATGTTATTAATACACCAGTACGTAAGATCTCCCCTCAACCTTCTGTTAGCCGCGCGAAAAGCCCTGATTTGAAAACTGTCTCTTGTACGGATAGTTTGTTGACACACACACCTGCACAGTCAGCACCTGAGAGATTGTTGCTCGGTTCTGATGTTAAGCTTCAGAAAATGAATGCCCAAAAGTCTGCGTCATGTTTTAAGCCTGCAAAAAGAGTGCTCGACTTTACACTCACAGAAGGCAGTGATGATTTGGACAAATCTTTTGAGGACTGCAAATCTTTTGGTTCTGTTTCCCTACCTCAGGAGGTAGACGAGAACCTTACTCATTCTTTTGAGAAAACCAACGTAGATCAAACTGGTCTGGATGCATCGGATAACAATCCTTCATCAATGTTGGAACTGGTTAATGTGATCAACTCTATATTTGGCTCTGTCAAAAGAACATCAATCACAAAAGAGGAGCTTCTGCAAAAGATAATGATGAATTGTTTAGATTTTGTTGAGATTAGAGAAGCTGAAGAACATATCGAGATTTTGGAAAAGATTGTGCCAGACTGGATTTGCAAGAAGGTGGTTTCTTCTGGAGACACTATGTACTGCGTTAAGAATGCGTCTGATTTGGACTCGGTTCGATCAAGGCTTCTCAGCAATGTGACCAAAGGAGATGAGTGA 1566 0.3953 MDPKACDKSMKDSSDFNRAKILHAIDKSIACPTPEKKTEPSLATNFKDPQTQLPEKYMVIADLFSDMSCALRLLHLRKKSPTFQNICKKVEVLAKRNFSYAHLAQMKYILPKGIEIEKVVVVDKKSLCMKPDLKITLVFEVVEDHSEQSADLSLIRYFNSRLINFFNLHPEGTDVPEAALPEPFSQRPYNLVFKDGPLNLSTEFSSTSNEIELSLNNLHLSPSFKRHFSQKNVANETEQVQSFSSSENSLSSHESDCLDNQESESTWQKEPTPLFDRVSNFNAERGKQKESLSMCIEPNVINTPVRKISPQPSVSRAKSPDLKTVSCTDSLLTHTPAQSAPERLLLGSDVKLQKMNAQKSASCFKPAKRVLDFTLTEGSDDLDKSFEDCKSFGSVSLPQEVDENLTHSFEKTNVDQTGLDASDNNPSSMLELVNVINSIFGSVKRTSITKEELLQKIMMNCLDFVEIREAEEHIEILEKIVPDWICKKVVSSGDTMYCVKNASDLDSVRSRLLSNVTKGDE* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3597 521 SUPERFAMILY "Winged helix" DNA-binding domain 49 184 IPR036390 -
Mal6g3597 521 Gene3D - 422 519 IPR038090 -
Mal6g3597 521 Pfam DNA replication factor CDT1 like 53 117 IPR014939 -
Mal6g3597 521 PANTHER DNA REPLICATION FACTOR CDT1 3 514 IPR045173 GO:0003677|GO:0030174|GO:0071163
Mal6g3597 521 MobiDBLite consensus disorder prediction 235 273 - -
Mal6g3597 521 SMART CDT1_2 53 182 IPR014939 -
Mal6g3597 521 CDD Cdt1_m 34 183 IPR014939 -
Mal6g3597 521 Pfam DNA replication factor Cdt1 C-terminal domain 428 486 IPR032054 -
Mal6g3597 521 PANTHER EXPRESSED PROTEIN 3 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3597 Mal-Chr6 105398368 105402562 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3597 296 512 Core DNA Replication Machinery Family AT3G54710 28.906 1.71e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3597 K10727 - gmx:102670055 538.88